Panicum virgatum (switchgrass): 120706037
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Entry
120706037 CDS
T07260
Name
(RefSeq) DNA damage-binding protein 2-like
KO
K10140
DNA damage-binding protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03420
Nucleotide excision repair
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120706037
09124 Replication and repair
03420 Nucleotide excision repair
120706037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120706037
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120706037
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120706037
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
120706037
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
BSP_II
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
120706037
NCBI-ProteinID:
XP_039846537
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All DBs
Position
5K:7604460..7608807
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AA seq
587 aa
AA seq
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MGPTARAQFVYNRRRRRSGGRHAVEEASDEEEQRQDSSSSSEDEEDEAEASGEEVADDDD
DEEEEEEEEAAVEPAAEEDPAAAAAGEKRGGRKGRITISLKKVCKVCKRTGHEAGFKGAV
YIDCPMKPCFLCKMPGHTTLTCPHRVAMEHGVIPAPRRNTNTSLDYVFQSQIKGKISMVK
PKFLIPNQLESGNIKFHQRRVTCLEFHPTNNNVLLSGDKKGLLGVWDYVKLHEKITYDSV
HSCILNSMKIDNANDGILYTASSDGTISCTDLDTGIGSPLLNLNPNGWNGPSSWRMIYGM
DLNTDKGLILVADNFGFLYFLDRRSKTRIGHPILIHKKGSKVTTLHCSPARPEVLLSSGN
DHYARIWDTRKLEANSPLASLAHGRVVNSGYFSPQSGNKILTTCQDNRIRVWDYIFGDLQ
SPSREIVHSHDFNRHLTPFKAEWDPKDYTETVAVVGRYISENYNGVALHPIDFIDTSSGK
LLAEVMDPDITTISPVNKLHPRDDILATGSSRSIFIWKPKTEDELTEERTKQKAKEYVYG
SGSQKKTNGKHDNSSDDDSDGDSGRKNKKAKKTRFTCTTKGKGKSKV
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgggccccaccgcccgcgcccagttcgtgtacaaccgccgccgccgccgcagcggcggg
cggcacgccgtcgaggaggcctccgacgaagaggagcagcggcaggacagttcctcctcg
tcggaggacgaggaagacgaagcggaagcgtcgggagaagaagtcgctgacgacgacgac
gacgaggaggaggaggaggaggaggaggcggctgtcgagcccgcggccgaggaggatccc
gcagcggcggcggcgggggagaagaggggcgggaggaagggccggatcaccatcagcctc
aagaaagtgtgcaaggtgtgcaaaaggacagggcacgaagcagggttcaagggggccgtg
tacatcgactgccccatgaagccctgcttcctatgcaagatgccaggtcatacaaccttg
acttgcccacatagagtagcaatggagcatggtgttatcccagcccctcgaaggaataca
aacacttcattagattatgtctttcagagccaaatcaagggcaagatttccatggttaag
cccaaatttctgatacccaaccaactagagtctggaaacataaaatttcatcagaggcgt
gtgacttgcttggaatttcacccaacaaacaacaatgttcttttatcaggagacaagaaa
gggcttctgggtgtttgggattatgttaagttgcatgagaagattacatatgattctgtg
cactcctgcattctgaacagtatgaagattgataacgccaatgatgggatactatacaca
gcttcctctgatggtactatcagttgcacagacttggatactggcattggctcccccttg
ttaaatctcaacccgaatggttggaatggtccgagctcttggcgcatgatatatgggatg
gacttaaacactgacaaaggtcttattttggtggcagataacttcggttttctttacttc
ctggatagacgatcaaagacaagaattggacatccgattctcatacataaaaagggtagc
aaggtaaccacccttcattgcagccctgcacgacctgaagttcttctgagcagcggaaat
gatcactatgcccgtatttgggatacaagaaagcttgaagccaactcaccccttgccagc
cttgctcatgggcgggttgttaattcaggatatttttctccacaaagtggtaataagatc
ttgacaacatgtcaggacaaccggattcgtgtatgggactatatttttggtgatctgcaa
tccccaagtagagaaattgtacacagtcatgatttcaaccgtcacctgactcccttcaaa
gctgagtgggacccaaaggattacacagaaactgttgcggtcgttggtcgttacataagt
gagaactacaacggtgttgctttgcatccaattgatttcatagataccagttctgggaag
cttctggctgaggtgatggaccctgacataacaacaatcagcccagtaaataagctacat
ccgcgagatgatatcctggcaacaggaagctcaaggtccattttcatttggaaaccaaag
actgaagatgaacttacagaagaaaggaccaagcagaaggctaaggaatacgtatatgga
tcaggttcccagaagaaaacaaatggtaagcatgacaatagtagtgatgacgattcagat
ggggattctggcagaaagaacaaaaaagcaaagaagactcgtttcacttgtaccacaaag
ggaaaaggcaaatccaaagtctga
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