Panicum virgatum (switchgrass): 120706053
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Entry
120706053 CDS
T07260
Name
(RefSeq) cryptochrome-1-like isoform X1
KO
K12118
cryptochrome 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120706053
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Motif
Pfam:
FAD_binding_7
Cryptochrome_C
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
120706053
NCBI-ProteinID:
XP_039846562
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Position
1K:38136614..38140654
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AA seq
710 aa
AA seq
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MSASQSSMSGAGEAGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPAYVWAPEEDGPYFP
GRVSRWWLSQSLKHLDASLRRLGATCLVTRRSADAVVALLDIVRSTGATHLFFNHLYDPL
SLVRDHRVKELLTAEGITVRSFNSDLLYEPWEVLDDDGCPFTMFAPFWNRCLCMPDPAAP
LLPPKKINSGDLSRCSSDELIFEDESERGSNALLARAWSPGWQNADKALTAFLNGPLIDY
SVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGEESCTWFLRSIG
LREYSRYLTFNHPCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATG
WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDR
IDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPDSVLQAAGVELGSNYPRPIV
ELDEANSRLQDALSEMWELEAASRAAMENGMEEGLGDSSDVALIDFPQELQMEVDRQPVR
PTQTPMMAGRRRQDQMVPSLTSSFIRAETELTADFDNISEDSRPEVPSNMHLQPRMEREE
TVDGGTSNGAMMNGNHQQQNLQNNTRRVLGVAPSVSEASSSWTGRGGIVPVWSPPAASGH
SDPYAADEADISSRNYLDRHPQSHTMMNWSQVNSRSHCEFRCMDNRVGSG
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgtcgcagtcgtcgatgagcggcgccggggaggcgggggtgcggacggtggtg
tggttccggcgggacctccgggtggaggacaacccggcgctggcggcggccgcgcgggcg
gccggggaggtggtgccggcctacgtgtgggcgccggaggaggacgggccctacttcccc
ggcagggtgtctcggtggtggctcagtcagagcctcaagcatctcgacgcctcgctccgc
cggctcggcgctacctgcctcgtcacccgccgctccgccgacgccgtcgtcgccctgctc
gacatcgtccgcagcaccggcgccacgcacctcttcttcaaccacctctacgacccactg
tcactggtccgggaccaccgcgtgaaggagctgctgacggccgagggcatcaccgtgcgg
tccttcaactccgatctgctgtacgagccgtgggaggtcctcgacgacgacggctgccca
tttaccatgttcgcgcccttttggaacaggtgcctatgcatgcccgaccccgcagcgccg
ttgctgccgcccaagaagatcaattcaggtgacttgtcgaggtgctcatccgacgagctg
atctttgaagacgagtccgagaggggaagcaatgcgctgctggcacgggcctggtcaccg
ggatggcagaacgctgacaaggcgcttacggctttcctcaatggcccgttgatcgactac
tccgtgaaccgcaagaaggctgatagcgcaagcacctccctgttgtccccgtacctgcac
ttcggtgagctcagtgtccgcaaggtcttccaccaggtccggatgaagcagctgatgtgg
agcaatgaaggcaaccacgctggcgaggagagctgcacttggttccttcgctccatcggc
ctgcgggagtactcgaggtacctcaccttcaatcatccctgcagccacgagaagccactc
ctgtcgcacctcaggttcttcccttgggtcgtcaacgaggtatacttcaaggtctggagg
caggggaggaccggctaccctcttgttgacgctggcatgagggagctctgggcaactggg
tggcttcacgatcgcatacgtgtggtggtctcaagcttttttgtcaaggtgctccagttg
ccatggcgctggggaatgaagtacttctgggatactttgctggatgctgaccttgagagt
gacgccctaggttggcagtacatttctggatccctccctgatggccgtgagcttgaccgc
atcgacaaccctcagtttgaagggtacaagtttgacccacacggggagtatgtccgacga
tggctaccggagctagcaaggctgccaacagaatggatacaccacccctgggatgcacct
gactctgtgcttcaggctgcaggagttgagctaggctccaactaccctcgccccatcgtt
gagttagatgaagccaattccaggttacaggatgccctgtcagaaatgtgggagcttgag
gcggcctctcgggctgccatggaaaatggaatggaagaaggccttggcgactcctcggat
gtggcactgattgacttccctcaagaattacagatggaagtggaccgacaaccggtccga
cctacccagacaccaatgatggcaggtcggagacgacaagatcagatggtgcctagcttg
acttcctcattcattagagctgaaacagaactcactgcggattttgacaacatcagcgag
gacagtaggccggaggtgccatcaaacatgcatttgcagcctcgaatggaaagagaagaa
acggttgacggtggcactagtaatggtgcgatgatgaacggaaatcatcagcagcaaaac
cttcagaacaacacacgccgggtgctaggtgttgctccatcggtttcagaggcatcgagc
agctggacaggcagaggtgggatagtaccggtctggtcaccaccggcagcttcaggacat
tctgatccatatgctgccgatgaggctgacatttccagtaggaattatttggacaggcac
ccacaatcacatacgatgatgaactggagtcaagtcaactctcgcagtcattgtgagttc
agatgcatggacaacagggtgggaagtggataa
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