Panicum virgatum (switchgrass): 120706140
Help
Entry
120706140 CDS
T07260
Name
(RefSeq) actin-interacting protein 1-2-like
KO
K24736
WD repeat-containing protein 1 (actin-interacting protein 1)
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pvir04990
]
120706140
Domain-containing proteins not elsewhere classified [BR:
pvir04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
120706140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
PD40
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_NUP159_NUP214
eIF2A
Beta-prop_Vps41
Ge1_WD40
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR75_2nd
DUF5711
RAB3GAP2_N
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
120706140
NCBI-ProteinID:
XP_039846648
LinkDB
All DBs
Position
5K:complement(8964844..8969974)
Genome browser
AA seq
610 aa
AA seq
DB search
MAQLVETYACSPATERGRGILLAGDTKTDTIAYCTGRSVIIRRLDAPLDAWAYQDHAYPT
TVARFSPNGEWVASADASGSVRVWGRYGDRALKAEFRPLSGRVDDLRWSPDGLRIVVSGD
GKGKSFVRAFVWDSGSTVGEFDGHSKRVLSCDFKPTRPFRIVTCGEDFLANFYEGPPFKF
KNSIRDHSNFVNCIRYSPDGSKFITVSSDKKGLIYDGKTGEKIGELSAEGGHTGSIYAVS
WSPDSKQVLTVSADKTAKLWDIMEDASGKLNRTLACPGTGGVDDMLVGCLWQNDHLLTVS
LGGTFNVFSASNPDKEPVMFAGHLKTISSLVLFPQSSPRTILSTSYDGVIMRWIQGVGYG
GRLMRKNNTQIKCFAAVEEELVTSGYDNKVFRIPLNGDQCGDAESVDVGGQPNALNLAIQ
NPEFALITTDSGIVLLHNSKVISTTKVNYTITSSSVSPDGTEAVVGAQDGKLRIYSINGD
TVTEEAVLEKHRGAITSIHYSPDVSMFASADVNREAVVWDRASREIKLKNMLYHTARINT
VAWSPDSRLVATGSLDTCAIVYEIGKPAASRITIKGAHLGGVHGLTFVDNDTLVTAGEDA
CIRVWKVVQQ
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagctggtggagacgtacgcgtgctcgccggcgacggagcgcggccgtgggatc
ctcctggccggggacacgaagacggacacgatcgcctactgcaccggccgcagcgtcatc
atccgccgcctcgacgcgcccctcgacgcctgggcctaccaggaccacgcctaccccacc
accgtcgcccgcttctcccccaacggcgagtgggtcgcctccgccgacgcctccggcagc
gtccgcgtctggggccgctacggggaccgcgcgctcaaggccgagttccgccccctctcg
ggacgcgtcgacgacctccgctggtcccccgatggcctccgcatcgtcgtctccggggac
ggcaagggcaagtccttcgtccgcgcattcgtgtgggactctggcagcacggttggtgag
tttgatgggcactcaaagagggttctgagctgtgactttaaaccaacacggccatttcgc
attgttacatgtggcgaagattttctggctaatttttacgaaggaccgccgttcaaattc
aagaattccataagggatcactcaaactttgttaactgtatccggtattctcctgatgga
agtaagtttatcactgtgagttctgataagaaggggttgatatatgatggcaaaactgga
gaaaagattggggagctttccgctgaaggcggtcacacggggagcatatatgctgttagc
tggagtcctgacagtaaacaagtgctaactgtttctgctgataaaactgcgaaattatgg
gatatcatggaagatgcaagtgggaaactgaatagaactttggcttgtcctggtacagga
ggtgtggatgacatgcttgtaggctgcctctggcagaatgaccatctcttgactgtctcc
cttggtgggacatttaatgtgttctctgcaagcaatccagacaaagaaccagttatgttt
gcaggacatttgaagactattagttctttggttttgtttcctcaaagtagcccaagaact
atattgtctacaagttatgatggggtcatcatgagatggatacagggcgttggatatggt
ggcagattgatgcgcaagaacaatacccagattaaatgctttgctgcagtagaagaagag
cttgttacttcagggtacgataataaggtgttcagaattcctcttaatggagaccagtgt
ggagatgccgagtcagttgatgtaggaggtcagccaaatgctttgaaccttgcaattcag
aatcctgaatttgcactgatcaccacagattctgggatcgtactgctgcacaactccaaa
gttatttctacaacaaaagtcaattataccatcacttcctcttctgtttctcctgatggc
actgaagctgttgtgggtgcacaagatgggaaactgcgcatatattccatcaatggggat
acagttacagaagaagctgtgcttgagaagcaccgaggtgctattacttccatacattat
tcaccagatgtttctatgtttgcttctgctgatgtcaacagggaagctgttgtgtgggat
cgggcaagtagagagatcaagctgaagaacatgctgtaccacacagctcggatcaacacc
gtggcctggtcacctgacagtcgtttggttgccactggctcactggacacctgcgctatt
gtctatgagataggcaagccagcagccagtcgcattaccatcaagggagcacatcttggt
ggcgttcatggtttaaccttcgtcgacaatgatactctggtgactgccggtgaagatgct
tgcattcgtgtctggaaggtggtgcagcaatag
DBGET
integrated database retrieval system
