Panicum virgatum (switchgrass): 120706185
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Entry
120706185 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120706185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120706185
03012 Translation factors [BR:
pvir03012
]
120706185
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120706185
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120706185
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120706185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_19
AAA_16
PhoH
ATPase
AAA_30
Motif
Other DBs
NCBI-GeneID:
120706185
NCBI-ProteinID:
XP_039846702
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All DBs
Position
5K:complement(9709898..9721194)
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AA seq
1241 aa
AA seq
DB search
MLLTSVLRGRVRHLRRPRPLTMPTPFFLSRNPNPSPSATNPHLPSDPRSAAMSTSGVYVP
PMRRLRSVIASTNGSLAPPPSAAAQAQQAARTPEWPMDERSLSPPSPPQPHRRDVPPLPR
PPKPEHFRQQSAGYSRYAYDDFSEDDSDREMDRTSVSSKGGSTLDNVDEWKWKLHMLLRN
DDEQEIISRERKDRRDFEQLAQLADRMDLHSRQYSRVVVFSKVPLPNYRSDLDDKRPQRE
VSIPSGLQREVDALLADYLTRKRTNSGNFPSAAFSRSSSTDSFATDEGFFDQQDNQTSTS
AVMERIQRRKSLQLRNQQAAWQESNDGQSMMEFRRSLPAYKEKQTLLEAISQNQVVVVSG
ETGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAIAVSERVAAERGEKIGESVGY
KVRLEGMRGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDL
LPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRNHFLEDILEFTGHRLTPYN
QIDDYGQEKSWKMQKQAQGKRKSQIASAVEDAVEAADLRNYSPRTRDSLSCWNPDSIGFN
LIENVLCHICQKERPGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSE
QKLIFDKPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWIS
KASARQRRGRAGRVQPGECYHLYPRCVYDSFADYQLPELLRTPLQSLCLQIKSLRLGSIS
EFLSRALQSPESLSVQNAIEYLKVIGAFDQNEELTVLGKHLSMLPVEPKLGKMLIFGAIF
NCLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAYEGWREAERD
RAGYDYCWKNFLSVQTLKAIDSLRRQFLFLLKDTGLVDENMTLCNKWSRDENLVRAVICA
GLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKEAKIPFPWLVFNEKVKVNSVFLRD
STAISDSILLLFGGNIKQGGLDGHLKMLGGYLEFFMSRDLASTYLSLKNELENLIHCKLQ
NPRMDIQTSEELLSAIRVLVTEDPCSGRFVYGRQEQRSKKAKTMLSSSSMNGGGGNGGDN
AKNQLQTLLTRAGNDNPSYKTKQIKNSLFRSTVEFNGMQFVGQPCANKKLAEKDAAAEAL
NWLTGNGGGAATDSRDAGNADPMSVLMKPPRRRRHSHRRRS
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgctcctgacctccgtcctgcggggtcgcgtccgccacctccgccggccacgccccctg
accatgcccacccctttcttcctctccagaaaccctaatcctagccccagcgcgactaac
ccccacctcccatcggaccccaggtccgccgccatgagcaccagcggagtctacgtgccg
ccgatgcggcgtctccgctcggttatcgcttccaccaacgggagcctcgcgccacctccg
tccgccgcggcgcaggcccagcaagcggcgcggacgccggagtggccgatggacgagcgc
tcgctcagccccccgtcgccgcctcagccgcatcggcgcgatgtacctcccctgccgcgg
ccacccaagccagagcatttccggcagcagagcgctgggtattcccgctacgcttacgat
gatttctctgaggatgactcggatcgggagatggaccgtacatcagtctcaagcaagggt
ggatccactttagataatgttgatgaatggaaatggaaactgcacatgcttctccgtaat
gatgatgaacaagagattatctcaagggaaagaaaggacaggcgagattttgaacaactt
gcccaacttgctgaccgaatggatttgcacagccgtcagtattctagagttgttgtgttc
agtaaggttccattgcctaattatagatcggatcttgatgacaaaagacctcaaagagag
gtttctataccttctggtttgcaaagagaagttgatgctttgcttgccgactaccttaca
cgaaagagaacaaacagtgggaacttccctagtgcagccttctcaaggtcaagcagcaca
gacagttttgcaactgatgaagggttctttgaccagcaagataatcaaacttccactagt
gctgtgatggagagaatccaaagaaggaaaagcctacagttgcggaaccagcaggctgct
tggcaggaatcgaatgatggtcaaagcatgatggagtttcgtcgcagcctccctgcttac
aaagaaaagcaaactttattggaagctatatcacagaatcaggttgttgtagtttcaggt
gagactggctgtggtaagactacacaactaccacagtacattttagaatctgaaatcgat
gctgctcgtggtgccacgtgcagtattatttgcactcaaccaagaagaatatcagccatt
gctgtgtctgaaagagttgctgctgaaaggggagagaaaattggtgaatcggttggctac
aaagttcggctggaaggcatgagaggaagggatacacgccttcttttctgcaccactgga
gtcctgttgcggagattgctggtggacagaaacttgaaaggtgttacccatgttattgtt
gatgaaatccatgagaggggcatgaacgaagattttcttcttattgtcttaaaggacctt
cttccacgccgtcctgaactaaggcttatattgatgagtgcaacccttaatgctgagctc
ttctcctcatactttggtggagcacccatgatacatatacctggttttacatatcctgtc
cggaatcattttctggaagatattcttgaatttactggacatcgattgactccatacaat
caaattgatgactatggtcaagaaaaaagttggaagatgcaaaaacaagctcaaggaaaa
aggaagagccaaatcgcttctgctgtggaagatgcagttgaagctgctgatttgaggaac
tatagtccgcgaactcgtgattctctatcatgttggaatcctgattcgattggttttaat
ttaatagaaaatgttttatgccatatttgtcaaaaggaacgacctggtgctgttctcgta
tttatgactgggtgggatgacattaatgcactaaaagagcagctgcaagcaaatccatta
cttggagacccaagcaaagttttgctgcttgcttgtcatggctctatggccagttcagaa
cagaaattaatatttgataagcctgagcctggagtaaggaaaatagttcttgccaccaat
ttggctgaaactagtattactatcaacgatgttgtttttgttgttgactgtggcaaagca
aaagagacatcttacgatgcactgaataatactccctgtttgcttccaacatggatctcc
aaggcttctgccagacaaagacggggacgagctggccgagtccaaccgggggagtgctac
catctttatccacgatgtgtatatgactcatttgctgactaccaattaccagagcttcta
cgaacccctctccagtccctctgtttgcaaataaaaagcttgaggctgggaagtatatca
gaatttttatccagagctttgcagtcaccagaatctctatcagtacaaaatgccattgaa
tatcttaaagtcattggagcatttgatcagaatgaagagttgacggttcttggaaagcac
ctgtctatgcttccagttgaacctaagctaggcaagatgcttatttttggggctattttt
aattgtctggacccaatattaaccatagtttccggacttagtgttagagaccctttcttg
actcccttcgacaagaaagatcttgctgagtcagctaaattacagttttcatgccgggat
tacagtgaccatcttgcacttgttcgtgcatatgaagggtggagggaggctgaacgagat
cgtgctggctatgactactgctggaaaaattttctttctgtgcaaaccttgaaagcaata
gattccctccggcggcagtttctctttcttctgaaggatactggtttggttgatgaaaac
atgactttgtgcaataaatggagccgtgacgaaaatctagttcgagcggtaatttgtgca
gggctatatcctggtgtttcttcggttgtgaacaaggagaaatccatttccctcaagaca
atggaggacgggcaggttatgctttattcgagttcggtcaatgggaaagaagccaagatt
ccattcccctggctggttttcaatgagaaggtgaaggtgaattctgtttttctccgggat
tcaactgctatatctgattcgattctgttgctattcggaggcaacataaaacaagggggc
ttggatggacacttaaaaatgcttggcggttacctggaattcttcatgagtcgtgatctt
gcatccacttacttgagtctaaagaatgagctcgagaatttaatccattgcaagctccaa
aacccaaggatggatatccaaacgagtgaagagttgctatcagccatccgtgtgctggtc
actgaggacccatgcagtggccggtttgtttatggacgacaggagcaaagatccaagaaa
gcaaagacgatgctctcatcatcctccatgaacggcggaggtggtaatggcggtgacaac
gccaagaaccagctccagaccctcctgacccgggccggaaatgacaacccatcctacaag
acaaagcagatcaagaacagcctcttcaggtccacggtcgagttcaatggcatgcagttt
gtcgggcagccgtgtgcaaacaagaagctcgcggagaaggacgcagctgcggaggcactg
aactggcttacagggaatggtggaggtgcagccactgactctagggatgccgggaatgcg
gatccaatgtccgtgttgatgaaaccaccgcgcaggaggcggcatagccatcggaggagg
agctga
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