KEGG   Panicum virgatum (switchgrass): 120706226
Entry
120706226         CDS       T07260                                 
Name
(RefSeq) protein decapping 5-like isoform X1
  KO
K18749  protein LSM14
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120706226
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120706226
SSDB
Motif
Pfam: LSM14 FDF SM-ATX
Other DBs
NCBI-GeneID: 120706226
NCBI-ProteinID: XP_039846742
LinkDB
Position
5K:complement(10374557..10380047)
AA seq 645 aa
MAAEAPPSAASASASSSASAPRPPAASGSGGGAAASPESYIGNLISLTSKSEIRYEGVLY
NINTEESSIGLRNVRSFGTEGRKKDGMQIPASDKVYEYILFRGSDIKDLQVKSSPPPPPP
QAASLHNDPAIIQQSHFSQPASTSSSLPSAGGTVVPDLSSQAAQYGLQRPSFQSNLPLYQ
PGNTPWGSSVAPQAGNASTLSVPPMYWQGYYGHSSGLPPHLQPPPFLQPTPGLSVPQNLQ
YPGLNPSLPSGLQKLSELQPSLMPPVTSQGPSSGILPATTAPASATLLAPESSKPLLPNM
GSLFAPPVTSLGATFPFPSQPTSTAETSASVSQNLNSFGSSKAAALPGSTLAYQTVSQSV
SSTVAPSSSSQVEMPVPLLAPSGQLLQNTTSMLSSSHSMQTPLQMGSKESKPVEPKAKVT
EPLLPDPLLPDPPSRALPENKEPILPLPKQTPQKYNGSGSHNHHNFRGRGRGRGSAFSQS
VTAFTEEFDFTAMNEKFNKDEVWGHLGKKSQSRDKDGEMGGDVFDEDFEVEETENPELAV
KPVYVKDDFFDSLSSGTFGRGGGPNGRGRFSERRRVDTETFGEFPRHRQPYRGGARGYRG
GGRSRGGYYGGRGYGNMGQGGGYGNMATGGPGNSYPQRGGSYGRD
NT seq 1938 nt   +upstreamnt  +downstreamnt
atggcggctgaagcgccaccgtcggcggcgtcggcgtcggcgtcctcctccgcgtcggcc
ccgcggccgccggccgcgtccggctccggcggcggggcggccgcgtccccggagtcgtac
atcgggaacctcatcagcctgacctccaagagcgagatcaggtacgagggcgtcctctac
aacatcaacaccgaggagtcgagcatcggcctgcgcaacgtgcggtcatttgggaccgaa
ggacggaagaaagatggaatgcagattcccgctagtgacaaagtttacgagtacatcctc
tttcggggaagtgatatcaaggatctgcaagttaagtcatctccaccaccgccgccacca
caagcagcttccctgcataatgatcctgccataatccagcagtcacatttttcccaacca
gcatcaacttcttcaagtttgccttcagctgggggtacagttgtaccagacctcagctcc
caggcagctcaatatgggcttcagaggccaagttttcagagcaatcttccactgtatcaa
ccagggaacactccatggggatcatcagtggcgcctcaggcaggaaatgcttccacactt
tcagttcccccaatgtattggcaaggatactatgggcattcaagtggactgccacctcat
ttgcagccacctccttttcttcagcccacaccaggattgtcggttccccagaatctccaa
tatccaggacttaatccttctttgccatctgggctgcaaaagctgtcggaactccaaccc
tcattgatgccacctgttactagtcaaggtccttcatcaggtatcctgcctgctacaaca
gctcctgcttctgctaccttattagctccagaaagttcaaagcctcttctgccgaacatg
ggatcgttgtttgctcctcctgtgacatctcttggtgccacttttccttttccaagccag
ccaacttccacggctgaaactagtgcatcagtgtcacagaacttgaattcttttggtagc
agcaaggctgctgctcttccaggctcaacactggcataccaaactgtatctcagtctgtt
tcttcgactgttgccccatctagctcatcccaagtggagatgcctgtgcctttgttagca
ccatcaggtcagctattgcagaacacaacatccatgctttcatcctcgcactccatgcag
acccctttacagatgggcagcaaagaatcaaagccagttgagcctaaggcaaaagttaca
gaaccactgctacctgaccctttgctacctgatccaccatcacgtgctctgcctgaaaat
aaggagcctatattaccattgccgaaacaaacacctcaaaagtacaatggatctggttca
cacaaccaccacaacttcaggggccgtggaaggggtagagggagtgcgttttcacagtcc
gtaacagcatttactgaagaatttgatttcactgccatgaatgagaagttcaacaaagac
gaagtctggggtcatcttggtaagaaatcccagtcaagggataaggatggtgagatggga
ggtgatgtgtttgatgaagattttgaagttgaggaaacagaaaacccagagttggctgtc
aagcctgtttatgtcaaggatgacttttttgattccctctctagtggaacatttggacgt
ggaggagggccaaatggaaggggcaggttttcagaaaggcggagagttgacacagagaca
tttggcgagtttccaaggcatcggcagccctaccgtggtggtgcccgtggttaccgtggt
ggtggccgttcccgtggtgggtactatggtggcagaggctacgggaacatggggcagggt
ggtggctatggaaacatggccacaggtggccctggaaattcgtatcctcaacgtggtggg
tcgtatgggagagattga

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