Panicum virgatum (switchgrass): 120706289
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Entry
120706289 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120706289 isoform X1
KO
K13144
integrator complex subunit 7
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120706289
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
120706289
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
INTS7_C_plants
INTS7_N
INTS7_HB
IRX15_IRX15L_GXM
Motif
Other DBs
NCBI-GeneID:
120706289
NCBI-ProteinID:
XP_039846834
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Position
5K:complement(11201284..11206868)
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AA seq
1211 aa
AA seq
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MERIPAASAMDWSIDLDRGLRSRHHATRVRALDAAGPRLRQLCACPAAPAPVASAFGVLP
GEAGVFAETMLLRLAAEFRSAGGATRARVVRVLLSAAGARGALPGACVADPDQLLRRVKA
VYDAGSARDRALALRVFGCLAEVAKDSVHVRSLILSSLGSSSALEVKAALFAAGCICRVS
EDFSRIMLEVFRRLICSRTSEPQVIMAAIKAFSKLDCTLAVIRRVHEVGKQMILGTLEDV
FKSEMLYSLSRLVSKSIILFRDQVDLLLLFLNHDSTHMKSTALKCMCFMFHRHTYHFPVI
RTVLGRLLPLIDDVDFSLDYKSDVLRILQKIFCGKASGIHHLSGSELSKLLVAAESYLHS
SSLEMQGTALEILVEVFCILKQAWPDLNMTTLKGSSFAYAECQGVTNNVSLTSEENCMNR
ALYKIIAMIVNYILSQVNQVISSEKKEVTSGNICTPSELDKKYIAPFRLMLKLVSCYPSA
ATVALGELRGLVKELSQINGSNYSEVAVTSVEPFQTSVALEELSASNGNAELLATSIGAS
HIETDIGKGKPDPTKFDCKNKKSITHDLTLCTLKFANACHNVLCKTSGARYNLHDSIKGL
IECVHQTDSQYWSTYEAFHLIICACIARHTCKLIDGNQELCGSKEEPNFFSTPSVWIAQE
LCALRMTKMLIKKQKYWEAYRSSMYCCCKGLWFTASFVFRKLADAFNPGSFSCWIKSLLL
FSAGEIEMKLLLFPSATIKLVGELQIDNDLSEDLYCAETDFDSILSASQELHDHQAKITG
ICGRTCLANDALESNASSDFEFFFQRWFISLRSSFLEILTDILGILSSNSSAYEGREEHL
NVSGELIQGQILALASCSLRLSDLAKSYDLLAASHMDMDRHSSSSLARLAFMCSLLAFCT
AYSVDFSRAYNDVEPCKLPKRFSHALVLQDLHGRVDGSDRQIVSQLQQFMPTSFDAQVCL
QSSLRMDCTGILEKDSYSLCHFAVASLLRARGNAKSDGMTNRADCLYSLHEGLQLLSIIL
QKLMELPFVVPKYFFRVRPCLGAELYMFVSNPVDTSGMSVEPGFQLSLTLGMQWKRVLER
TAIRPVKLYCILAASSTPCFDAAGTRSKQFGPQKTSEIVELNAKLLWYIKSDLRKGRDEK
DSQSGSEMVTAFACFEPADSGQGFSACLLDVSSFPEGSYQIKWLACCVDDSGSYFSLLPL
NDGAIFSVRKS
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggagaggatcccagcggcgtccgccatggactggagcatcgacctcgacaggggcctc
cgttcccgccaccacgccacgcgcgtccgcgccctcgacgccgccggcccgcgcctccgc
cagctctgcgcctgccccgccgcccccgcgcccgtcgcctccgcgttcggcgtcctgccc
ggggaggcgggcgtcttcgcggagaccatgctcctccgcctcgccgccgagttcaggagc
gccggcggcgccacgcgagcccgcgtcgtcagggtcctcctctccgcggcgggggcacgc
ggcgcgctgcccggggcgtgcgtcgcggaccccgaccagctgctcaggagggtcaaggcg
gtctacgacgcagggagcgcgcgggacagggcgcttgcgctgcgcgtcttcggctgcctc
gccgaggtcgccaaggacagcgtgcatgtccgctcgctcatactctccagcttgggctcc
tcaagtgctctagaggtcaaggcagcactttttgcagctggttgcatttgtcgtgtgtca
gaggacttctcacggataatgcttgaagtgttccgaagattgatatgttctcggacatca
gaaccacaagttatcatggcagcaattaaggctttctcgaagcttgattgtacgttggct
gttatccgtagagttcatgaggttggaaagcagatgattctaggaacactggaagatgta
ttcaaatctgaaatgctctattcactctcaagattggtgtccaagtctatcattttattc
cgcgaccaggtggatttactgttactgtttctgaatcatgattccactcatatgaagtct
acggcgttaaaatgcatgtgttttatgtttcacagacacacctaccattttccggttatt
aggactgttcttggcagattgttgccactaattgatgatgtggatttttcacttgactat
aagagcgatgtgttacggattctgcagaagattttctgtggtaaagcgtcaggcattcat
catttaagtggttctgaattatctaagcttcttgtggctgctgaaagttatttacattct
tcttccttggagatgcaaggtacagctctagaaatacttgtggaagtcttttgcattctc
aagcaagcgtggccagatctgaacatgaccactcttaagggttcatcatttgcatatgct
gaatgccaaggagtaaccaacaacgtatcactaacttctgaggaaaattgtatgaacaga
gcgctgtataagatcatagcaatgattgtgaattatattttatctcaggtcaatcaagta
atcagcagcgaaaagaaagaagtcactagcggaaacatctgcacgccatctgaattggat
aagaaatacatagctcctttcagacttatgctgaagcttgtctcatgctacccttctgct
gctactgttgctcttggtgaactaagaggcctggtaaaagaactatctcaaattaatggc
agtaattactctgaagttgctgttacctctgttgaaccattccagacaagtgttgctctt
gaggaattgagcgcttcaaatggcaatgctgaacttttagctacaagtattggagcttct
cacattgaaacagacattggtaagggaaaaccggatcccaccaaatttgattgcaagaat
aaaaagtccattacacatgatctcactctttgcacgctcaagtttgcaaatgcctgtcac
aatgtgctttgtaaaacatctggtgctagatacaatcttcatgatagcattaagggtcta
attgagtgtgtccatcagactgactctcaatattggagcacatatgaagccttccatctg
ataatttgtgcttgtattgctcggcatacttgtaaactaatagatggtaatcaggaatta
tgtggttcaaaagaggagcctaatttcttctcaacgccttcggtttggatagctcaggaa
ttatgtgcacttcgaatgaccaaaatgcttataaaaaagcagaaatactgggaagcttat
aggtcttctatgtactgttgttgtaaaggtctctggttcacagcttcctttgtcttcagg
aaactggcagatgcatttaatccaggctctttcagttgttggatcaaatcattgctactt
ttttctgctggggaaattgagatgaagctattgctttttccctcagcaactataaagtta
gttggtgagctacagatagataatgatcttagtgaggacctttactgtgctgaaacagac
tttgacagtattctcagtgcatctcaagagttgcatgatcaccaagcaaaaatcactggt
atttgtggcagaacatgcttagctaatgatgccctagaatcaaatgcctcctcagatttt
gaattctttttccagagatggttcattagtctccgatcatcatttcttgagatcttaact
gacattcttggtattcttagttcaaattcttctgcatatgaaggaagagaagaacatcta
aatgtatcaggagagcttatccaaggccaaatacttgctttggctagttgctctttaaga
ctaagtgatctggcaaagagttatgatctccttgctgcatcccatatggacatggatcgt
catagctccagtagtttagccaggcttgctttcatgtgctcacttttggcattttgtact
gcatattctgtggatttctcaagagcatataatgatgtagaaccgtgcaagcttccgaag
aggttttctcatgctttagtcctacaagatttacatggaagagtagatgggtcagacagg
cagattgtttcccaactgcaacaattcatgcccacttcttttgatgcacaagtctgttta
cagtccagtttacgaatggactgtacaggtattctcgaaaaggattcttattctctttgc
cattttgctgtggcatctttgcttcgtgcacgtggaaatgctaaatctgatggaatgaca
aatagagcggactgtttatattctttgcatgaagggttgcaacttctgtccatcattttg
cagaagttaatggaattgccttttgtggttcccaagtatttcttcagagtaaggccttgc
cttggtgctgaactttacatgtttgtttcaaatcctgttgacacaagtggaatgtcagta
gagcctggtttccagttgtctctgacccttggcatgcagtggaagcgcgtgttggagaga
accgccatccgccccgtgaaattgtactgcattctagctgcaagctcgacaccctgcttt
gatgctgcaggaacaagaagcaaacagtttggaccgcagaagacctctgaaattgttgag
cttaatgcgaaactgctgtggtacataaagagtgatctgaggaagggcagggatgagaag
gattcccagtctggctccgagatggtgacggcatttgcatgcttcgaaccagctgatagc
gggcagggattttcggcttgcctgctggatgtctcctcattccctgaaggttcgtatcag
ataaagtggctcgcgtgctgcgtcgacgacagcggctcctatttcagcctcctgcctctg
aatgatggcgctatcttctctgtccgaaagtcctga
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