Panicum virgatum (switchgrass): 120706379
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Entry
120706379 CDS
T07260
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120706379
04120 Ubiquitin mediated proteolysis
120706379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120706379
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120706379
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120706379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
120706379
NCBI-ProteinID:
XP_039846946
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All DBs
Position
1K:complement(38636766..38641087)
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AA seq
504 aa
AA seq
DB search
MIRLQTYAAFSLLATASAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRLFLGSLREAEVERLNEQCWREVVEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFLAFLLIVDCLFLSNSFRSLMDKWEASVAIFFSFEYM
ILATSTVSTFVKYIFYVSDMLMEGQWEKKAVYTFYLELISDLVHLSLYMLFFIAIVLNYG
VPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATAEELNASDATCIICREEMT
AAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRAASARYGAQPGGQPAAGIGT
PASEGAAGENMSRRQAKIEVAIAAASLYGRSFAYPPANTLNRSGPPQSTSSIPQTEASSS
NQSHKDQELQCQNTSDGLAPLPFNAHGGISSGTSTRDLEISLQKAQENFIKSQIEMLQIQ
LQMVQRAAAVSVTDNESAEHTKND
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtcttcagacgtacgcggcgttcagcctgctggcgacggcgtcggcggtgtac
tacgccttcagcagccgggagcagttctacccggcgatggtctacctctccacctccaag
atctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcaactc
gtcaagcgcctcttcctgggatcgctccgggaggccgaggtcgagcgcctcaatgagcag
tgctggcgggaggtcgtcgagatcctcttcgcggtcaccatcttccgccaggacttctcc
gtctccttcctcgccatggtcgccgcgctgctccttgtcaaggcactgcactggctggcc
cagaagagggtcgagtacatcgagaccacaccctccgtgcccatgctctcgcacataagg
atcgtctccttcctggccttcctgctcatcgtcgactgcctcttcctgtccaactcgttc
aggtcgctcatggacaagtgggaggcgtcagttgccatattcttctcctttgagtatatg
atactggcaacatcgacagtatcaacatttgtgaagtatatattctatgtcagtgacatg
ctaatggaaggtcaatgggagaagaaggcagtgtatacattctatttggagctcatcagt
gaccttgtgcacttgtcattatacatgctcttcttcatagctatcgtcctgaactatggt
gtcccactgcacttgattcgcgagctatatgagacattccgcaacttcagaattcgcatt
gctgattatgtacggtacagaaagatcacttccaacatgaatgaacgctttccagatgct
acagcagaagagctcaatgcgagtgatgctacatgtatcatttgccgtgaggagatgact
gcagcaaagaagttgctttgtggccatctgttccatgtccattgtctaaggtcatggtta
gagcgccagcacacttgccccacatgcagagctccaatcatccccccagataatggacgt
gctgcatcagcgcgatatggagctcaacctggaggtcagcctgctgcaggtattggcact
ccagcctcagaaggagcagcaggtgagaacatgagcaggcgccaagcaaagattgaagtg
gctatagcagctgcttctttatatggaagatcttttgcttatcctccagcaaacacccta
aataggtcaggtcctccccaatctacatcaagtataccacaaaccgaagcaagtagctcc
aatcaatcccataaagatcaagaactgcagtgccaaaacaccagcgatggtttagcacct
ctgccttttaatgcacatggtggtattagttcagggacaagcaccagggatcttgaaatt
tcactgcagaaggcacaagaaaactttataaagagccagatagagatgttacaaatccaa
ctgcaaatggttcagcgtgctgctgctgtgtcagtcactgataatgagagtgccgagcac
acaaagaatgactga
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