Panicum virgatum (switchgrass): 120706388
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Entry
120706388 CDS
T07260
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120706388
09123 Folding, sorting and degradation
03018 RNA degradation
120706388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120706388
03041 Spliceosome [BR:
pvir03041
]
120706388
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120706388
mRNA degradation factors
5'-3' decay
Lsm complex
120706388
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120706388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
120706388
NCBI-ProteinID:
XP_039846956
LinkDB
All DBs
Position
5K:complement(12370831..12375233)
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AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRKPPGVGRGGRGRGDIGAKPGGRGIGRGQDD
GGRGSGGRGRGGVGGKGGNKGGGRGRG
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctcgctcctgaagactgcccaggggcatcccatgctcgtggagctgaag
aatggagaaacgtacaacgggcatctggtcaactgcgacacgtggatgaacatccacctt
agggaggtcatttgcacctcaaaggatggtgacaggttttggaggatgccggagtgttac
atccgagggaacaccattaagtatcttcgagttccggatgaggttattgacaaggtccag
gaggaaacttccaaaagccgatcagataggaagccaccaggtgttggccgcggcggaaga
ggaaggggagacatcggtgctaaacctggaggcagaggcattggacgtggccaagatgat
ggaggtagaggcagtggtggccgaggaaggggtggagttggtgggaaaggcggtaacaaa
ggtggaggccgtggccgtggctga
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