Panicum virgatum (switchgrass): 120706442
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Entry
120706442 CDS
T07260
Name
(RefSeq) RAN GTPase-activating protein 1-like
KO
K14319
Ran GTPase-activating protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120706442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120706442
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120706442
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WPP
LRR_6
LRR_4
LRR_14
LRR_NXF1-5
NPIP
LRR_9
Motif
Other DBs
NCBI-GeneID:
120706442
NCBI-ProteinID:
XP_039847032
LinkDB
All DBs
Position
5K:13048692..13051609
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AA seq
547 aa
AA seq
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MDSAPQDFQPRTFSIKLWPPSESTRLKLVERMTKNLSTESIFSRKYGLLGKEEAHENAKR
IEQLCFASADEHFKREPDGDGSSAVQMYAKDTSKMMLEVLKKGPRITAESEAPVSDTPLG
GDTVLDISGGKRAFIEADEAKELLSPLTKPGNSYKRICFSNRSFGTDAANVAGPILESVK
NQLTEVDISDFVAGRSEDEALDVMRIFSKALEGAVLRYLNISDNALGEKGVRAFSELLKS
QENLEELYVMNDGISEDAAKALSELIPSTEKLKVLHFHNNMTGDEGAVYVAEMVKRSPNL
ESFRCSATRIGSDGSVALSEALGTCTHLKKLDLRDNLFGVDAGIALSKTLPKLPDLVELY
LSDLNLENKGTVAIVNALKQSAPQLEVLEMAGNEINAEAAPDIAECLTTMQSLKKLTLAE
NELKDAGAVIIAKSLEDGHADLKELDVSTNMFQRAGARCFARAVANKPGFVQLNINGNFI
SDEGIEEVKGILKAGKNSLDVLGSLDENDPEGEPDNGDEEDDEDGKDDDDDDGLDLKLQS
VQVEHDD
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggattcagcaccgcaagacttccaacccaggacattctccatcaagctgtggccacca
agtgaaagcacgcgcctcaagcttgtagagaggatgaccaagaacctgtccactgagtcc
atattttctcgcaagtatggacttttgggcaaggaagaggctcatgagaatgctaaaagg
attgaacaactgtgctttgcatctgcagatgagcacttcaagagagaacctgatggtgat
gggagttctgctgtccagatgtatgctaaagacactagcaagatgatgttggaagttctt
aagaaaggcccaaggattactgcagaatcagaagcaccagtatctgatacacctcttggt
ggtgatactgtattagatatatctggtggcaagcgtgcctttatcgaggcagatgaagca
aaggaactgctgagtccacttaccaaacctggaaactcatataaaaggatttgctttagc
aataggagctttggtactgatgctgctaatgttgctggacctatccttgagtcagttaag
aatcagcttacagaggtagatatatccgattttgtcgcaggaaggtcagaggatgaagca
cttgatgtgatgcgcatattctccaaagcactagagggcgctgtactgagatatctaaac
atatccgacaatgcactaggtgagaagggtgtcagggcattcagtgagctcctgaagtca
caggaaaatttggaggaactctatgtcatgaacgatggcatatcagaagacgctgcaaaa
gctctttctgagcttattccttcaactgagaagctcaaggttctccacttccacaacaac
atgactggagatgaaggtgctgtgtatgtcgctgaaatggttaagcggtctccaaatctg
gagagtttcaggtgctcagcaacaaggataggatctgatggtagtgtcgcattgtccgag
gcattggggacatgtacacatctgaagaaactggatcttagggataacttgttcggtgtt
gatgcagggattgctctcagcaaaacccttccaaagcttcctgatcttgttgagctttac
ctgagtgacctaaatcttgagaataagggtacagtagcaattgtcaatgccctcaaacag
tcagcgccacagttggaagtccttgaaatggctggaaatgaaataaatgctgaagcagcc
ccagatatagcagaatgcctaacgaccatgcagtcactcaagaagctgaccttggctgag
aatgaactcaaggatgccggtgctgtgattattgcaaaatctttggaagatggccatgca
gatctcaaggaacttgatgtaagcacaaacatgtttcagagggctggagcacgctgcttt
gcacgggcagttgcaaataaacctggttttgtgcaactgaacatcaatggtaatttcatc
tctgacgaagggattgaagaggtgaaaggtattttgaaggctggtaagaattcgctggat
gttctgggctcactagatgagaacgatcctgagggggagcctgataacggtgatgaggag
gatgacgaagatggcaaggacgatgacgacgatgacgggctggatttgaagctgcagagc
gtacaggtggagcatgatgattaa
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