Panicum virgatum (switchgrass): 120706483
Help
Entry
120706483 CDS
T07260
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120706483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120706483
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
120706483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ERCC3_RAD25_C
RAG1_imp_bd
Motif
Other DBs
NCBI-GeneID:
120706483
NCBI-ProteinID:
XP_039847077
LinkDB
All DBs
Position
5K:13577040..13585855
Genome browser
AA seq
991 aa
AA seq
DB search
MTHLTGRTGPASVSTTPRHAAGARVASPAMAAACGDPLTPTSGIFYRRHKKSAEHNTSVL
TPGVATYSSGHALPVASRVPSLEFGSASKEWENIHQCKIQLINFLSSLERPSENSVIANR
MAGGKLNNYSMEPRKQQENTEIIEIGDSDDEDGNHSGSNKFSLKINKELTTSELASNITK
WVPSNGMSHAFGSMHIEGNKNTQIVPYGQSAALVNQFPLQTSWQPSVQYEKVVLQKRPEE
QRMQDLVAVNIAEKRAETQVFLSHPTEKKRRRSDPSLHVSEDATTAPRQRKRKSGTDPVA
ADLSLDLGQTDISSEPDLPMKEEEKPKNESDSLEEYWKDFALAIESTKIDAFDEAANEKE
EDHGKVEDVDCNHDIRIHEDLGHVCRVCGMIVRRAESIIDYQWKKASRRRTSCYGGHSKD
ADDIDCGSVRLSEEFIVADIAIHPRHAKQMRPHQLEGFNFLVKNLIGDKPGGCILAHAPG
SGKTFMLISFIQSFLARYPSARPLVVLPKGILGTWKKEIQQWQVQDIPLYDFYSVKAEKR
VDQLEVLKSWEDKMSILFLGYKQFSTIVSDDGGSKAAAACRDRLLKVPNLLIMDEGHTPR
NRETDVLESLSRVETPHKVVLSGTLFQNHVGEVFNILNLVRPKFLKMESSRPVVRRIMSQ
VEMSGRSSKGIGYNAFTESVEGTLLNDDNFKRKAHVIRSLRELTKDVLHYYKGDILDELP
GLVDFSVFLNLTSIQKEVIHKKMRAYDKFKRSAVDTSLYVHPCLSEISEVNAEDRANNLT
DQSIDTMIESIDVRDGVKARFFMNILSLASSAGEKLLAFSQYLLPMRFLERLLVKVKGWH
VGKEIFMISGDTSQEDRELLVDQFNNSADAKVLFGSIKACGEGISLVGASRVVILDVHLN
PSVTRQAIGRAFRPGQQKKVFVYRLVAADSAEEKHHETAFKKEVIPKLWFEWSEHCTTED
FKLGQVDIDDCGDELLDTKAMRQDVKALYRR
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgacgcatctcaccggccgcaccggcccggcgtccgtgtcgacaaccccacgacacgcg
gcgggtgcgcgcgttgcctcgcccgccatggccgccgcttgcggcgacccgctgaccccg
acctccggcatattttacagaaggcacaagaaatctgctgagcataataccagtgtatta
acacctggagttgcaacctattccagtggtcacgcacttcctgttgcaagtagggtcccc
agtttggaatttggcagtgctagcaaggaatgggaaaacattcatcagtgcaagatacaa
ttgatcaacttcctttctagtctggaacgtccctctgaaaattctgtgatagccaacaga
atggcaggtggcaaattgaacaattattctatggagccaagaaaacaacaagaaaatact
gaaataatagaaattggtgattcagatgatgaggatggaaaccattcaggatccaataag
ttttccctaaagataaacaaagaactgacaacatctgaattggctagtaatatcacgaaa
tgggtgccatccaatgggatgagccatgcatttggaagcatgcatattgaaggaaacaaa
aatacacagattgttccatatggtcaaagtgcagctttagtgaatcaatttcctttgcaa
accagctggcagccatctgttcagtatgagaaagttgtattgcagaaaaggcctgaggag
cagcgtatgcaagatcttgtggctgttaacattgcagagaagagagcagaaacacaagtg
ttcctttcacatcctacagagaaaaagcgaaggagatcagaccccagcttgcatgtcagc
gaagatgctaccactgcccctagacaaaggaaaagaaaatctggcacagatccagtagct
gctgatttgtcattggatttaggacaaactgatatttcatcagaacctgacctgcctatg
aaggaagaggagaaaccaaaaaatgaaagtgacagtcttgaggaatattggaaggatttt
gcgttggccatcgaaagtacaaagattgatgcatttgatgaggcggcaaatgagaaagaa
gaggatcatggaaaggtggaggatgtcgactgcaatcatgacattcggattcatgaagac
ttgggccatgtatgccgtgtctgtggaatgattgtgagaagagctgaatcaataattgat
tatcagtggaaaaaggcttcaaggagaagaacaagttgctatggaggacattcaaaggac
gctgatgacatagattgtggtagcgttagactgtctgaagaattcatagttgcagatatt
gctattcatcctagacatgcgaagcaaatgagaccacatcagttggaaggattcaacttt
ttggttaagaatttgatcggagacaagcctggaggttgcattcttgctcatgccccaggt
tcggggaaaacatttatgcttataagttttattcagagcttcctagcaaggtatccatct
gcaaggccccttgttgtgctacccaaagggatattgggtacttggaagaaagaaattcaa
cagtggcaagtacaggacataccattgtatgatttctactctgttaaggctgaaaaaaga
gtagaccaattggaagtcctcaaatcttgggaagacaagatgagtatactgtttcttgga
tacaagcagttctccacaattgtctctgatgatgggggcagcaaagcagcagctgcatgt
agggacaggctgctaaaggtccccaaccttttgataatggatgagggacatacaccaaga
aatagggagactgatgtactagaatctctgagtagagtggaaacaccacacaaagtggtc
ctttcaggtacactattccagaatcacgttggggaagtgtttaacattttgaatcttgtt
cgcccaaaatttctcaaaatggaatcatcccgtcctgttgttagacggataatgagtcaa
gtagaaatgtcaggtagaagttcgaaagggattggctacaatgcatttactgagtcagtt
gaaggaacgctgttgaatgacgacaacttcaagagaaaagctcatgtcattagaagtctt
agagagcttaccaaggatgtccttcactactacaaaggtgacatattagatgaactacct
ggcttggttgacttcagcgtgttcttgaacctgacttccattcagaaagaggttattcac
aagaagatgagagcatatgacaagttcaaaagaagtgcagtagatacttcattgtatgtg
catccgtgtctttcagaaatttcagaagttaatgctgaggatagggctaacaacttaaca
gatcaatcaattgatactatgattgagtccatcgatgtgagagatggggtgaaggccagg
tttttcatgaatatcctgtcacttgctagttccgcaggagagaaattacttgcttttagc
caatatctacttccaatgagatttttggaaaggctgctggttaaggtgaaaggctggcat
gtggggaaagagattttcatgatatctggtgatactagtcaagaagacagagaattgcta
gttgaccaatttaacaactctgctgatgcaaaagtactgttcggttctatcaaggcatgt
ggcgagggtatctcccttgttggcgcgtcgagagttgtcattttggatgttcacctgaac
ccatctgtcacccgtcaagcgattgggcgtgcattcaggcctggacagcagaagaaagtg
tttgtatacaggcttgtagctgctgattctgccgaggagaagcaccatgagactgcattc
aagaaggaagttataccgaagctgtggttcgaatggagtgagcactgcacaacagaagac
ttcaaacttggtcaagttgatattgatgactgtggggatgaattattggatactaaagca
atgcgtcaggatgtcaaggcactgtatagaaggtag
DBGET
integrated database retrieval system
