Panicum virgatum (switchgrass): 120706485
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Entry
120706485 CDS
T07260
Name
(RefSeq) rhomboid-like protein 20
KO
K25216
ubiquitin-associated domain-containing protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120706485
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LMBR1L-GP78-UBAC2 complex
120706485
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UBA
UBA_7
Rhomboid
CUE
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
120706485
NCBI-ProteinID:
XP_039847080
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Position
5K:13661246..13667076
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AA seq
292 aa
AA seq
DB search
MQGGVSGFQNAPVTRAVVLTSGLLSVVFSAQRRARALGISYQEIITNFRLWKIFPSVFAF
QSTPELMFGLYLLYYFRVFERQIGSNKYSVFCLFTITVSSLLEILSLVILKDTNYISTLA
SGPYGLIFSSFVPFFLDIPITSRFRIFGLNFSDKSFIYLAGLQLLLSSWKRSLIPGIFGL
VAGSLYRLNVFGIRKMKILQVISSFFARYFAPSPGSTPRPSRTVVGNTPSQRGRAVQNQS
STGFAPMVEPPESSVAMLVSMGFDGNDARQALIRARNDINVATNILLEVQSR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgcagggcggcgtctccggattccagaacgcgccggtgacgcgggcggtcgttctaacc
agcggcctcctctccgtcgttttcagcgcgcaacgtcgcgcgcgcgccctcggcatctca
taccaggaaattataacaaatttccgtttatggaagatattcccatccgtgtttgctttc
cagtcaacaccagagttaatgtttgggctgtaccttctctattacttccgtgtgtttgag
aggcagattggatctaacaaatactcggttttttgcttgttcactatcacagtgtcatca
cttcttgagatcctatcattggttatcctgaaagatacaaattacatcagcacacttgca
tctggaccttatggtcttatattttcctcatttgttccattctttcttgacattccgatc
acatcacggttccgtatctttggcctaaatttcagcgacaaatcattcatttacctagct
ggtcttcagcttcttttatcttcttggaagcgctcccttattcctggtatatttggtctg
gttgctggttctctctatcgtctaaatgtgttcggcatccgcaaaatgaagattctacag
gttatttcatcattttttgcaagatactttgccccttcgccaggaagtacgcctcgtcct
tccaggactgttgttggaaacacaccgtctcaaagaggccgtgctgttcagaatcagtca
tctactggatttgcacctatggtggaacctccagagtcctctgttgctatgctggtctcg
atgggctttgatggcaatgacgctagacaggcactcattagagctagaaatgacatcaat
gtggcaacgaacatcctactcgaagtacagtctcgttga
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