Panicum virgatum (switchgrass): 120706487
Help
Entry
120706487 CDS
T07260
Name
(RefSeq) hydroxymethylglutaryl-CoA lyase, mitochondrial-like
KO
K01640
hydroxymethylglutaryl-CoA lyase [EC:
4.1.3.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00280
Valine, leucine and isoleucine degradation
pvir00650
Butanoate metabolism
pvir01100
Metabolic pathways
pvir04146
Peroxisome
Module
pvir_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
120706487
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
120706487
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120706487
Enzymes [BR:
pvir01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.4 hydroxymethylglutaryl-CoA lyase
120706487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMGL-like
Motif
Other DBs
NCBI-GeneID:
120706487
NCBI-ProteinID:
XP_039847084
LinkDB
All DBs
Position
5K:complement(13670322..13674838)
Genome browser
AA seq
449 aa
AA seq
DB search
MLAAIRQTTRVCSRLASPHASSPAAAAAAAAALASSPVLGSGMSGLERQPAPTVAGIGGT
TGRSRGADHPPPRPCSSSGESREGYQWGGVPYQRQPMPHHRKVIAGSNHHVSGASCSSLY
QQSCRYFSSSSDQERIRAGNKLISDLPRCVKIVEVGPRDGLQNEKDTVPTPVKVELIRRL
AASGLSIVEATSFVSPKWVPQLADAKDVMEAVRNTEGVRLPVLTPNIKGFEAAIAAGAKE
IAVFASASEGFSKSNINCTIKESLARYNDVALAAKEREINVRGYVSCVVGCPVDGPVPPS
NVAYVAKELYDMGCYEVSLGDTIGVGTPGTVVPMLEAAMSVVPVEKLAVHFHDTYGQSLS
NILISLQMGVSVVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIRTGVDLGKVMAAG
EFICKHLGRQSGSKAATALSKVTAKASKL
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgctggcggcgatccggcaaaccaccagggtctgctctaggctcgcttctccgcacgcc
tcctcgcccgccgccgccgctgctgctgcggcggcgctggcgagctcccccgtgctgggc
tccgggatgagcggcctggagaggcagcccgctcctacggttgccgggatcggcggcact
acggggaggagtcgcggggccgatcacccgccaccgcggccttgcagctcgtccggcgag
tcgagggaaggatatcagtggggcggagtgccgtatcaaaggcagccgatgccacatcat
cgcaaagtgatcgctggatctaaccatcatgtttctggtgcaagctgttcctcactgtat
cagcagagttgcagatatttttcatcctcttctgatcaggagaggatacgggctggaaac
aagcttataagtgatctgccaaggtgtgtaaaaattgtggaagttgggccacgagatgga
ctgcaaaatgaaaaggacactgtaccaacacctgtaaaggttgagcttatacggagactg
gctgcctcgggattatccattgttgaggcaactagtttcgtatctccaaaatgggtacca
cagctagctgatgcaaaagatgtcatggaagcagttcggaatactgagggtgtacgtctt
cctgtattgaccccaaacattaaggggtttgaggcagctattgcagcaggggcaaaagaa
attgcagtatttgcatcagcttctgaaggattttcaaagtcaaacataaactgcacaatc
aaagagagtcttgcccgctataatgatgttgctcttgctgccaaagagagagaaattaat
gtccgagggtacgtctcttgtgtggttggatgcccagtagatggaccagtaccaccgtca
aatgtagcttatgtagccaaagagctttatgacatgggctgctatgaggtttcacttggc
gataccattggagttggtaccccaggcaccgtggttccaatgcttgaggccgccatgtct
gttgttcctgtggagaagcttgctgttcatttccacgacacctacgggcaatctctctca
aacattctcatctctctccagatgggcgtcagtgtcgtggattcctccgtcgccggcctt
ggcggctgcccttatgcaaagggcgcgtcaggtaacgtcgcgaccgaggacgtagtgtac
atgctcaacgggttgggtatcaggacaggcgtcgacctgggcaaggtgatggctgcaggc
gagttcatctgcaagcacttaggacgccagtctggttccaaggctgcgactgcactgagc
aaggttactgcaaaagcctcaaaactctga
DBGET
integrated database retrieval system
