Panicum virgatum (switchgrass): 120706507
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Entry
120706507 CDS
T07260
Name
(RefSeq) protein PHYLLO, chloroplastic-like isoform X1
KO
K14759
isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:
5.4.4.2
2.2.1.9
4.2.99.20
4.2.1.113
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00130
Ubiquinone and other terpenoid-quinone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01240
Biosynthesis of cofactors
Module
pvir_M00932
Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
120706507
Enzymes [BR:
pvir01000
]
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.9 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
120706507
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.113 o-succinylbenzoate synthase
120706507
4.2.99 Other carbon-oxygen lyases
4.2.99.20 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
120706507
5. Isomerases
5.4 Intramolecular transferases
5.4.4 Transferring hydroxy groups
5.4.4.2 isochorismate synthase
120706507
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MR_MLE_C
TPP_enzyme_M_2
Abhydrolase_6
Abhydrolase_1
TPP_enzyme_N
Hydrolase_4
TPP_enzyme_C
Thioesterase
Abhydrolase_2
Abhydrolase_11
Ndr
Abhydrolase_3
Abhydro_lipase
MenC_N
Esterase
Motif
Other DBs
NCBI-GeneID:
120706507
NCBI-ProteinID:
XP_039847116
LinkDB
All DBs
Position
1K:38831681..38845135
Genome browser
AA seq
1729 aa
AA seq
DB search
MLAASPPPRLPLRHPVRPLLDFPLPSPRRRCRSTRGRLCGGPRPLCRLRADAAAGRRAGI
VIDTDEVGETGDRDLPVDVSFARRLPPALTVGDGLDALRRAADELKASPPAGAKSGVIRF
EVLVPPSTKALKWCSQFRGSSLFPQFYLSRKLTSGPSSQLEICGIGSAICLHGSYAVKNG
FDLVLRYISSDSHLIRAYGFVGMKYDRESSFIEEKLGSYYFFIPQVELSEFDSCSILSST
MIWDDSVSHTFEDAVSLFESCFNQIQNSYDPLDSICHKGLVPSYISGDAHLSETGNPQLV
YLDTELLATIDAEGIPLTLDKFLTSDQSFVRFSPEFLFCSNMELYMQQNETEPFIKRCSN
INLAWASLVVEECVRLGFTYFCIAPGSRSSPLALSATCHPLTTCISCYDERSLGFHALGY
GRGSRKPAVVITSSGTAVSNLLPSVVEASQDFIPIILLTADRPPELHDAGANQAINQVNH
FGTFVRYFFNLPPPSDQIHARMVLTTLDSAAYYAMQAPQGPVHINCAFKEPLDYTNRDWN
LDCLRGLDKWFTNSEPYTRYLIMKTVSAFGNYSCSVMEILQIIEKAEQGLLLVGALHTDD
DMWAVALLAKHLSWPIATDILSGLRLRKVVNLFPQFDKRILFIDHIDQILLSDSAKNWIS
PDVVVQIGSRITSKRVGMFLETCSPSSYILIDRHPCRHDPSHVVTHRIQASIVEFAASLC
RCTFQRKTSRWTDILMVANSVVAQEIMFQIHSKWSLTEPYVAHVIGESLYGDAIMFVGNS
MVIRDLDMFGKGWTDYTSNGNSLMMHHFLEFVGTLVAGNRGASGIDGLLSTAIGFAVGSN
KHVFCVVGDVSFLHDTNGLALLNQRARRKPMTIIVVNNHGGAIFSLLPIAKNTSPQILNK
FFYTSHDISISNLCAAHRVKHLLVQTKAELHDALVKSKVEQIDCVVEVDNSIDCNADFHR
IMSKFSAYSTTQYLDYLLGDPCSKSELDAMPVYTIHGAEYMLYRIQLSAPRTSALSDGRF
SHEGFILKLCMDDNIAGFGEVAPIEIHEEDLLDVEEQLRFLFHMMKDSVLDVIPLLRGSF
SNWIWTNLGIPPSSIFPSVKCGLEMAILNLLASQRKCGLSKFLAGSNPLVRDQNSYASIE
ICALVDCNGTPMEVALAVAKLVAEGFTTVKLKVGRRESPIEDAAVVHKIREVVGYKINIR
VDANQKWTYEQAVEFGSRAKSLRLEYIEEPVSSVNDLIKFCDKSGLPVALDETIDNLKGD
VIPKLHQFVHPGIVALVIKPSVVGGFEKAAHIAKWAQMHDKMAVISSAYESSVGLASYIQ
LAHYVDQQNSIVSRIKNKDTCGVVAHGLGTYQWLREDVSEHKLNIHATPLGDGIRASVED
ACGYLHHLNINNNKIERTYSEEKLRSYSIQVDVDDCSYLVKLQEAGDRINEKVVLLLHGF
LGTSDDWVPMMKALSPSARVIAVDLPGHGESQMLQHHVENSEQFPVTVQSLADLLLKLIC
QITDGEVVVVGYSMGARIALHMALNQVHLVTFSIFIFSVLFFLMLILSWLWQSPRQIRGA
VIISGSPGLRDEESRRRRIAIDKSRAKFLLSCGLECFLETWYAAKMWTSLREHPKFNSLV
RTRNKHKDIKALAKVLADSSVGRQRSLWEDLKHLKRPLLIVAGEKDTKFKDISQRMRTEI
TQHSECRSDGRGGDELCDMIVIPDAGHAVHVENPLPLVRAVRKFLQKLH
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atgctcgccgcctcgccccctccccgcctccctctccgccacccagtccgccccctcctc
gatttccctctcccatcccctcgccgccgctgccgctccacccgcggccgcctctgcggc
ggtccccgccctctctgccgcctccgcgcggacgccgcggccgggcggcgcgcgggcatc
gtgatcgacaccgacgaggtgggcgagaccggcgaccgggacctcccagtggacgtgtcg
ttcgcgcggaggcttccgcccgcgctcactgtcggcgacggcctcgacgcgctgcggcgg
gccgccgatgagctcaaggccagcccacctgctggcgccaagagcggcgtgatcaggttc
gaggtacttgttccacccagtacaaaggcactcaagtggtgctctcagtttagaggatca
tccttgtttcctcagttttatttatcgaggaagctaacctctggtccatcatctcaactt
gaaatatgtggcattggttctgcaatttgcttgcacggttcctacgcagtaaaaaatgga
tttgatttagtattgagatatatttcttctgactcacacttgataagggcttatggattt
gtaggcatgaaatatgacagggaatcatcattcatagaagagaaacttggctcatattac
ttcttcatccctcaggttgagttgagcgagtttgatagttgttccattttatcatcaacc
atgatttgggatgactctgtttctcacacattcgaggatgcagtttctttgtttgaatct
tgctttaatcagatacaaaatagctatgatcctttggatagcatttgtcacaaaggtttg
gtaccaagttacatttctggagatgcacatttgtcagagacggggaatcctcagttggtg
tatttggatacagaactgctcgccacaatagatgcagaaggtatccccttaaccttggac
aagtttttgacttctgatcagtcatttgttagattttcaccagagttcctcttttgttca
aacatggagttatacatgcaacaaaatgagacagaacctttcatcaagcgctgctctaac
attaatttggcatgggcatcccttgtagttgaagaatgtgttagacttggtttcacgtac
ttctgtatagctccagggtcgagatcttccccacttgcactttctgctacatgccatcct
ttgacaacatgcatatcatgttacgatgaacggtcacttggattccatgctcttggctat
gggagaggttcaaggaagccagcagtagtaatcacatcgtcaggaactgctgtatcaaat
cttcttccttcagtggttgaggcaagtcaagatttcataccaattatattactcacagct
gatcgtcctcctgagttgcatgatgctggagctaaccaagccatcaatcaggtcaatcat
tttggtacctttgtaagatacttttttaatctccctccgcccagtgaccaaattcatgca
agaatggttctcacaacacttgactcagcagcctactatgcaatgcaagctccacaaggc
ccagtgcatataaattgtgcttttaaagaacctctagattacactaatcgggattggaat
cttgactgtttgagaggtttggataagtggtttacaaatagtgagccgtataccagatac
cttataatgaaaacggtttctgcattcggtaattattcttgctcagtaatggagattctg
cagatcatagagaaggcagaacaagggcttctattagttggtgctcttcatacagatgat
gacatgtgggccgtggctttgctagctaagcacctctcctggccaattgctactgatatt
ctgtctggactacgattgcggaaagtagtaaatttgttcccacagtttgataagagaatt
ttatttatagaccacatcgatcaaattctattgtctgattctgctaaaaactggataagc
ccagatgtcgttgttcagattggtagtcgtattactagcaaacgagtgggaatgtttctc
gagacttgctccccatcttcctacatcttgattgatagacatccttgccgtcatgatcca
tcacatgttgtcactcacagaatacaagctagtatagtggaatttgctgctagcttgtgc
cggtgtacttttcaaaggaagacaagcagatggacagatattttgatggttgctaattca
gtggttgctcaggagataatgtttcagatacattcgaaatggtcacttacagaaccatat
gttgctcatgtaattggggagtcactttatggtgatgctatcatgtttgttggaaacagc
atggtcatccgagacttggacatgtttggcaagggctggactgattacacttcaaatgga
aatagcctgatgatgcatcattttctggagtttgttggcacattagtggctggaaacaga
ggagcaagtggcattgatggtttgctcagcacggcaatcggatttgctgttggatcaaac
aagcatgtattctgtgtggttggcgacgtatcttttcttcatgacacaaatggattggca
cttctcaaccaaagggcacggaggaaacctatgacgataattgttgtgaacaatcatggc
ggtgcgatcttcagccttctaccaattgcgaaaaatacttcaccacaaattttgaacaaa
ttcttctacacatcgcatgacatatcaatttccaacctctgcgctgcacacagggtaaag
catcttctagttcaaacaaaagcagagcttcatgatgccttggtgaaatctaaagtggaa
cagattgattgtgtggtagaagtagacaatagcattgattgcaatgccgactttcataga
attatgagcaagttctctgcctattctacaactcagtatctggattatcttctgggagat
ccatgctctaagagtgagttagatgccatgcctgtttatacaattcatggagcagaatac
atgctgtacaggatccagctttctgcaccacgtacctctgcgctatctgatggcagattc
tctcatgaagggtttattctgaagctttgtatggacgataacatcgcaggatttggtgag
gttgcaccaattgaaatccatgaggaggatctgttggatgtcgaagagcaacttagattt
cttttccacatgatgaaagattctgtgctagatgttattcctttgctgagagggtccttt
tccaattggatatggacaaaccttgggattcctccttcttcaatattcccaagtgttaaa
tgcggattggagatggccattcttaatttacttgcgtcacaacggaaatgtggattgtct
aaatttctcgctggttccaaccccttagtacgagatcagaacagttatgccagcatagag
atctgtgcactggtagactgcaacggtactccaatggaagtagcacttgctgtcgccaaa
ctggttgctgaaggttttaccacagttaaactgaaggttgggcgtcgtgaaagccccatt
gaggatgcagctgttgttcataaaataagagaagttgtaggatacaagatcaatatccgt
gttgatgcaaatcagaaatggacatatgaacaggcagttgaatttggatctagggctaaa
agccttcgattggaatacattgaggaaccagtgagctctgtaaatgatctcatcaagttc
tgtgacaagagtggcttgcctgttgcactagatgagactattgacaaccttaagggggat
gtaattcctaagcttcatcaatttgtgcatccaggaatagttgctcttgttattaaaccc
agtgttgttggaggttttgagaaggcagctcacatagcaaaatgggctcaaatgcacgat
aagatggctgtcatcagtagtgcgtatgagagttctgtaggtttggcatcctatatacag
ttagcacattatgttgaccaacaaaactccatagtctccagaataaagaacaaagataca
tgtggggttgtcgcacatggacttggaacatatcaatggttaagggaagatgtatcagag
cataagttaaatatccatgcaaccccacttggtgatgggatccgagcttcagtagaagat
gcctgtggttatcttcaccacttaaacataaacaacaataagatagaaaggacatacagt
gaagaaaaactgaggtcatattctatccaagttgatgtggacgattgttcttatctagtc
aaacttcaagaggctggtgatcgaataaatgaaaaggttgttcttttgcttcatggattt
cttggtacgagtgacgattgggttcccatgatgaaagctctctcccccagcgcacgggtc
attgctgttgatcttcctggtcatggcgagtcacaaatgttgcagcatcatgttgaaaat
tcagaacaatttcctgttacagtgcaatcacttgcagatttgttgctgaagttgatatgc
caaataactgatggtgaggtggtggtggttggctattcaatgggtgctaggattgcactc
cacatggcactaaatcaagttcacttggtaactttctcaatatttatcttttctgtgctc
ttctttcttatgctgattctgagctggttatggcagagtccaagacagattcgaggagct
gtgatcatatcaggaagtcctggattgagagatgaagagagtaggagacgtcgtattgct
attgataaatcaagagctaagttcctattgtcttgtgggctcgaatgttttcttgagaca
tggtacgctgcaaaaatgtggaccagtctacgagagcatccaaagttcaattctctagtg
aggacacgcaataaacacaaggacattaaagctctagctaaggttcttgcagactcgagc
gtagggagacaaaggtccctgtgggaagacttgaaacacttgaagaggcctctactcatc
gttgcaggtgaaaaggacacaaaatttaaagacatctcacagagaatgcgcaccgagata
acacagcacagcgagtgcagatctgatggtcgtggtggagacgagctctgtgacatgatc
gttatcccagatgccgggcacgctgtgcatgttgagaaccctcttcctttggtaagggcc
gtgcggaagttcttacaaaagctgcactga
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