Panicum virgatum (switchgrass): 120706518
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Entry
120706518 CDS
T07260
Name
(RefSeq) transcription factor CSA-like
KO
K09422
transcription factor MYB, plant
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120706518
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
120706518
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Ortholog
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GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
Caskin-Pro-rich
DUF6581
Motif
Other DBs
NCBI-GeneID:
120706518
NCBI-ProteinID:
XP_039847131
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All DBs
Position
5K:complement(14173699..14175602)
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AA seq
318 aa
AA seq
DB search
MAHKMAAFFGAAPPPAAALVPFREDQRHQDAAEEVYHADDMEDVGAGHGHGGGGGGQGKL
CARGHWRPAEDAKLKELVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFSE
EEEESLLAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRQREQSGALRRRKASSSS
PGPAPPPPPQHYAPVVVLHHHHYAGSHPLPFRASAHGVAAEAVAAPAADTRACSGGESEE
SASTCTTDLSLGSAGAAAVPCFHQSTYTGYDAAPRAAAFAPSARSAFSAPSAARHREAPP
SDDKVALPFFDFLGVGAT
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggctcacaagatggccgccttcttcggcgcggcgccaccgccggcggcggcgctggtt
ccgttccgcgaggaccagcggcaccaggacgccgccgaggaggtgtaccatgccgacgac
atggaggacgtcggcgctggccatggccacggcggcggcggcggcgggcaggggaagctc
tgcgcgaggggccactggcgccccgccgaggacgccaagctcaaggagctcgtcgcgcag
tacggcccccagaactggaacctcatcgccgagaagctcgacggcagatcagggaagagc
tgccggctgcggtggttcaaccagctggacccgcggatcaaccggcgggccttctcggag
gaggaggaggagagcctcctggcggcgcaccgcgcctacggcaacaagtgggcgctcatc
gcccgcctcttcccggggcgcaccgacaacgccgtcaagaaccactggcacgtcctcatg
gcgcgccgccagcgcgagcagtccggcgcgctccgccgccgtaaggcgtcctcgtcctcg
ccgggccccgcgccgccgccgccgccgcagcactacgcgcccgtcgtcgtcctgcaccac
caccactacgccggctcccacccgctgccgttccgcgccagcgcgcacggcgtcgccgcg
gaggcagtggccgcgccggcggcagacacccgcgcgtgcagcggcggcgagtccgaggag
tcggcgtccacctgcaccaccgatctctccctcggctccgccggcgcggccgccgtcccc
tgcttccaccagagcacgtacaccggctacgacgcggccccgcgcgccgccgcgttcgcg
ccgagcgcgcgctccgccttctccgcgccgtcggcggcgcgccaccgggaggctcctccc
tccgacgacaaggtcgcgcttcccttcttcgacttcctgggcgtgggcgcgacatga
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