Panicum virgatum (switchgrass): 120706528
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Entry
120706528 CDS
T07260
Name
(RefSeq) protein argonaute 4A
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120706528
03036 Chromosome and associated proteins [BR:
pvir03036
]
120706528
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120706528
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120706528
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120706528
microRNA pathway
RISC loading complex
120706528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
THF_DHG_CYH
Reo_sigmaC
Motif
Other DBs
NCBI-GeneID:
120706528
NCBI-ProteinID:
XP_039847143
LinkDB
All DBs
Position
5K:complement(14373128..14381396)
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AA seq
899 aa
AA seq
DB search
MEPHNGEADDLPPPPPLDAGIEPLKADETKKMLKPKRALVPRQGFGKKGQPIKLLTNHFK
VSLKNTEEFFYHYYVNLKYDDDTPVDSKGAGRIVIEKLQQTYATELANKDFAYDGEKSLF
TIGALPQINNEFTIVVEDASTGKTPANGSPGNDSSPGSDRKRVRRPYNTKTYKVGLSFAA
KIPMSAIALALKGQESEHTQEAIRVIDIILRQHSAKQGCLLVRQSFFHNNPSNFVDLGGG
VMGCRGFHSSFRATQSGLSLNIDVSTTMIVKPGPVADFLMANQKVDNPNMIDWTKAKRSL
KNLRIKITPTNAENKIVGLSDRSCRETMFTLKRRDGDSEEISVFDYFVKNRRIELRYSGD
FPCINVGKPKRPTYFPIELCTLVSLQRYTKSLSTLQRSSLVEKSRQKPQERMSVLSDVLK
RSNYDSEPMLMACGISIAKSFTEVDGRVLQAPKLKAGNGEDIFTRNGRWNFNNKRLIRAS
SVERWAVVNFSARCNVRDLVRDLIKCGGMKGIKVEDPFDAFEEHPSMRRAPAVKRVEEMF
EQVKSKLPGAPKFLLCVLAERKNSDVYGPWKKKCLAEFGIVTQCVAPTRVNDQYLTNVLL
KINAKLGGLNSMLQVESSPAMPLISKVPTMILGMDVSHGSPGQSGVPSIAAVVSSREWPL
ISKYRASVRSQSPKMEIIDSLFKPQGKDDKGLIRECLIDFYTSSGKRKPDQIIIFRDGVS
ESQFSQVLNIELDKIIEACKFLDETWDPKFTLIVAQKNHHTKFFIPGAPENVPPGTVVDN
KVCHPRNYDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAIS
VVAPICYAHLAAAQVGQFIKFDEMSETSSSHGEHTSAGSAPVQELPSLHEKVRSSMFFC
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggagcctcacaatggcgaggctgatgacttgcctcctccacctcctctagatgcgggt
attgaacctcttaaagctgatgaaacaaagaagatgttgaaacctaagagggctctggtc
ccaaggcagggttttggcaaaaaggggcagccaataaagcttctaacgaaccacttcaaa
gtttcgctgaagaacactgaagagtttttctatcactactatgtgaatttgaaatatgat
gatgatacacctgttgatagcaagggagcagggcggattgtgattgagaaacttcagcaa
acctatgctactgaacttgcaaataaagattttgcatatgatggtgagaagagcctgttc
acaattggtgctcttcctcaaattaataacgagttcactattgtggtggaagacgcttca
actggaaagactcctgcaaatggcagccctggtaatgacagttcacctggaagtgacagg
aaaagggtccgaagaccttacaatacaaagacgtacaaagttgggctgtctttcgcagca
aaaattcctatgagtgcaatcgcacttgctctgaaaggtcaggaatcagagcatactcag
gaagcaattcgagtgatcgatattattctgaggcagcattcagcaaagcagggttgcctc
ttggttcgtcaatcattcttccataacaatccatctaactttgttgaccttggaggtggt
gtaatgggctgtagaggattccattctagtttccgtgccacacagagtggactttcactt
aatattgatgtgtcaacaacaatgattgtaaaacctggacctgttgctgattttctgatg
gccaaccagaaggttgacaacccaaacatgattgactggacaaaggcaaagcgctcattg
aagaacttgaggataaaaataaccccaacaaatgcagaaaacaagattgttggtctgagt
gacagatcttgccgagaaacaatgtttacactaaagcgtagagatggtgactctgaagag
atcagtgtttttgactacttcgtaaagaaccgtcgcatagagctcaggtactctggtgac
tttccttgtatcaatgtgggaaaaccaaagcgtccaacttattttcctatagagctctgt
acgcttgtgtctttacaaagatacaccaagtcattgagtacacttcagaggtcttcactt
gttgagaagtctaggcagaaaccccaagaaaggatgtctgttctgtctgatgtactgaaa
cgcagcaactatgattcagagcctatgctaatggcatgtggcatttcaattgctaaaagt
ttcactgaggttgatggtagggtgctgcaagcccccaagctcaaagctggtaatggagaa
gacatttttacacgcaatgggagatggaacttcaacaataagaggctcattagagctagc
agtgttgaaagatgggcagtagtcaacttttctgcacgctgcaatgtcagagaccttgtc
cgagatctcatcaagtgtggtggcatgaagggaattaaagtagaagacccttttgatgca
tttgaagagcatccttcaatgaggcgggcacctgctgtaaaaagggtggaggaaatgttt
gaacaagtgaaatcaaagctgccaggagcacccaagtttcttttgtgtgttcttgctgag
aggaagaattctgatgtttatgggccttggaagaagaaatgccttgctgaatttgggatt
gttacacagtgtgtggcaccaacaagagttaatgatcagtaccttaccaatgtcctgctt
aagataaatgcaaagctgggtggcttaaattcaatgctccaagttgaatcatcccctgca
atgcctcttatatccaaggtcccaactatgattttgggaatggatgtatcccatggttct
cctggacaatctggtgtaccttccattgctgctgttgtcagttctcgtgaatggcctctt
atctcaaaatatagagcatcagtgcgctctcaatcacctaagatggaaattattgactcg
ttgtttaagccacagggaaaggatgataaaggcctgattcgggagtgtctgattgacttc
tacaccagttctgggaagagaaagccggatcaaatcataatcttcagggatggtgttagc
gagagtcagtttagtcaggtgctgaacattgagttggataaaataattgaggcatgcaag
tttttggatgaaacttgggatcccaagttcacattgattgttgcccagaaaaaccaccac
acaaagtttttcattcctggggcaccagaaaatgttcctcctggtacagtggtggacaac
aaagtctgccatccaaggaactatgacttctacatgtgttcgcatgctggaatgatagga
actacgagacctacacattatcacatccttcatgatgagatcggcttcaaccccgatgac
cttcaggagctggtgcactcactttcttatgtgtaccaaaggagtacaacagccatatca
gttgttgctcccatctgctatgcacatcttgctgctgcccaggtcggacaattcataaag
tttgatgagatgtcggagacatcctccagccatggagagcacacatcagcaggcagtgcc
cctgtgcaggagctgcccagcctccacgagaaggtcaggagctccatgttcttctgctga
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