Panicum virgatum (switchgrass): 120706628
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Entry
120706628 CDS
T07260
Name
(RefSeq) ABC transporter B family member 21-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120706628
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120706628
04147 Exosome [BR:
pvir04147
]
120706628
04090 CD molecules [BR:
pvir04090
]
120706628
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120706628
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120706628
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120706628
CD molecules [BR:
pvir04090
]
Proteins
120706628
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
AAA_29
AAA_21
AAA_16
ABC_ATPase
RsgA_GTPase
Zeta_toxin
AAA_30
DUF87
AAA_15
DEAD
G-alpha
Motif
Other DBs
NCBI-GeneID:
120706628
NCBI-ProteinID:
XP_039847244
LinkDB
All DBs
Position
5K:complement(15859571..15866391)
Genome browser
AA seq
1281 aa
AA seq
DB search
MPESWRPAEASAAAAAPPDAGAPGASARSRGAGNGGKGRAAGGGPGAKAPTRVPFHKLFA
FADSTDVALMLLGALGAVANGAAMPFMTVLFGNLIDAFGGAMGIHDVVTRVSNVSLEFIY
LAIASAVASFVQVTCWMITGERQAARIRNLYLKTILRQEIAFFDKYTSTGEVVGRMSGDT
VLIQDAMGEKVGKFIQLVVTFFGGFIVAFTQGWLLTLVMMATIPPLVLAGAVMSNVVAKM
ASLGQAAYAESSVVVEQTIGSIRTVASFTGEKRAVEKYNKSLKSAYKSGVREGLAAGLGM
GTVMVLLFCGYSLGIWYGAKLILEKGYTGAKVMNVIFAVLTGSLALGQASPSMKAFAGGQ
AAAYKMFETINRTPEIDAYSTTGRKLEDIRGDIEFRDVYFSYPTRPDEQIFKGFSLNIPS
GMTIALVGQSGSGKSTVISLIERFYDPQLGDVLIDGVNLKEFQLSWIRSKIGLVSQEPVL
FAASIKENIAYGKDNATDQEIRAAAELANAAKFIDKMPQGFDTSVGEHGTQLSGGQKQRI
AIARAILKDPRILLLDEATSALDAESERIVQEALDRVMTNRTTVIVAHRLSTVRNADTIA
VIHQGTLVEKGPHNELLRDPEGAYSQLIRLQEANRQDTRKGDSNARSGKQTSINKSASRR
SSRDNSSHHSFSVPFGMPLGIDIQDGSSNKLCDEMPQEVPLSRLASLNKPEIPVLVLGSI
ASVISGVIFPIFAILLSNVIKAFYEPPHLLRKDSQFWSSMFLVFGAVYFLSLPLSSYLFS
VAGCRLIRRIRLMTFEKVVNMEIEWFDHPENSSGAIGARLSADAAKVRGLVGDALQLVVQ
NSSTLVAGLVIAFVSNWELSLIILALIPLIGLNGWIQMKFIQGFSADAKMMYEEASQVAN
DAVSSIRTVASFSAEEKVMDLYKKKCEGPLRTGIRTGIISGIGFGVSFFLLFGVYAASFY
AGARLVEERKTTFPKVFRVFLALAMAAIGVSQSSTLTSDSSKAKSAASSIFAIVDRKSRI
DPSEDAGVTVETLRGNIEFQHVSFKYSTRPDVQIFRDLCLTIHAGKTVALVGESGSGKST
AISLLQRFYDPDVGHILLDGVDIQKFQLRWLRQQMGLVSQEPALFNDTIRANIAYGKDGQ
ATESEIIAAAELANAHKFISSALQGYDTMVGERGAQLSGGQKQRVAIARAIVKDPRILLL
DEATSALDAESERVVQDALDRVMVNRTTVIVAHRLSTIQNADLIAVVRNGVIIEKGKHDA
LINIKDGAYASLLALHSAASS
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgccggagtcctggaggcccgccgaggcgagcgccgcggcggcggcgccgcccgacgcg
ggggcccccggcgcctcggcgcggagccggggcgcgggcaatggcggcaaggggcgcgcg
gcggggggcggccccggcgcgaaggcgccgacgcgggtgccgttccacaagctgttcgcg
ttcgccgactccacggacgtggcgctgatgctgctgggcgcgctcggggccgtcgccaac
ggcgccgcgatgcccttcatgaccgtgctcttcggcaacctcatcgacgccttcggcggc
gccatgggcatccacgacgtcgtcacccgggtctccaacgtctcgctcgagttcatctac
ctcgccatcgcatccgccgttgcctccttcgtccaggtcacgtgctggatgatcaccggc
gagcggcaggcggcgcggatacggaacctgtacctcaagaccatcctgcgccaggagatc
gccttcttcgacaagtacaccagcaccggcgaggtcgtgggcaggatgtccggcgacacg
gtgctcatccaggacgccatgggcgagaaggtcggcaagttcatccagctcgtcgtcacc
ttcttcggcggcttcatcgtcgccttcacgcaggggtggctgctcaccctcgtcatgatg
gccaccatcccgccgctcgtcctggcgggcgccgtcatgtccaacgtcgtcgccaagatg
gcgtccctgggccaggcggcctacgcggagtcgtcggtggtggtggagcagaccatcggc
tccatcagaacggttgcgtctttcaccggcgagaaacgggcggtggagaagtacaacaag
tccctgaagagtgcgtacaagtccggcgtccgggaaggcctcgcggcggggctcgggatg
ggcacagtcatggtgctcctcttctgcggctactcgctggggatttggtatggcgccaag
ctgattctggaaaaggggtacacaggagccaaggtcatgaatgtgatctttgcagtcctc
actggttctctagctctaggtcaggcatcaccaagcatgaaagcgtttgcaggtgggcaa
gccgctgcatacaaaatgtttgagacgatcaacagaacaccggaaatcgacgcttacagc
accacaggaaggaagctggaggacatccgaggggatatcgagtttagggatgtctatttc
tcctatccgacaaggcctgatgaacaaatattcaagggtttctctctcaatataccaagt
ggcatgacaattgcactggtgggccagagtgggagtggtaaatccacggtcatcagccta
attgaacggttttatgaccctcagcttggtgatgttctgatagatggtgttaatctcaag
gagttccagttaagctggatcagaagtaaaatcggccttgtcagccaggagccagtcctt
tttgctgccagcataaaggagaacatagcttatggcaaagataatgcaacagatcaggaa
attagagctgctgctgagcttgctaacgctgccaaattcatagataaaatgcctcagggt
ttcgatacttcggttggtgagcatgggacacagctttctggtggacagaagcaaagaatt
gccattgcaagggctattctgaaagacccaagaatcctactattagatgaagctacaagc
gcactggatgctgaatctgaaaggattgtgcaggaagctcttgacagggtcatgacaaac
aggacaactgtcatagttgcacaccgtctgagcactgttagaaatgctgataccattgct
gtcattcatcaaggaacactagttgaaaaaggaccacacaatgagcttctaagagatcca
gaaggagcttatagtcagctgataaggctacaggaagctaaccggcaggacactcggaag
ggtgattccaatgctcgttcaggcaaacaaacgtcaataaataaatcagctagcaggagg
tcatcccgtgataacagtagccaccattcattctcggtaccatttggtatgccactcggg
attgacattcaggatggctcatctaacaaactatgtgatgagatgccacaggaagtacct
ctcagtcggcttgcatctcttaacaagccagagatcccggtgcttgtccttggttctatt
gcctcggttattagtggagttatcttcccaatttttgcgatactcctgtcaaatgtgatc
aaagcattctatgagcctccacatctactaaggaaggattcacagttctggtcatccatg
ttcttggtatttggtgcagtgtacttcttgtcactccctttgagctcgtaccttttctca
gtagctgggtgtaggttgattagaaggatccgactgatgacatttgagaaggtcgtaaat
atggagatcgaatggtttgatcacccagaaaactcaagtggagcaattggtgcaaggctg
tcagctgatgcagcgaaagttagaggacttgtgggagatgcacttcaattggttgtgcaa
aactcctcaacattagttgctggtttggtaattgcctttgtatcaaactgggaactatct
ctcatcatattagctttaataccacttattggcctaaatggatggatccagatgaagttt
attcagggtttcagtgcagatgccaagatgatgtatgaggaggcaagccaagtggctaat
gatgcagtaagcagcataagaacagtagcctcattttcagctgaagagaaggtcatggat
ttgtacaagaagaaatgtgagggcccccttagaacaggaatcaggacagggattataagt
ggaatcggttttggtgtttcctttttcttgctattcggggtatatgcagctagcttttat
gctggtgctcgacttgttgaggaaaggaagacaaccttccctaaagttttcagggttttt
cttgctcttgcaatggcggctattggagtgtcacaatcaagtacccttacatcggattct
tccaaagcaaaatcagctgcatcttctatatttgcaattgtagatcgaaagtcaaggata
gacccaagtgaggatgcaggagtgactgttgagacactgagaggaaatatcgaattccag
catgttagtttcaaatattctacaaggccagatgttcagattttccgggacctctgcttg
acaattcatgctggaaagactgttgcacttgtcggagagagtggtagtggcaaatcgaca
gcaatttcattgcttcaaagattctatgacccagatgtaggccatatactactagatggc
gtggacatacagaaatttcagctaaggtggctaaggcaacaaatgggcctggtcagtcaa
gaaccagctttgtttaatgacacgataagggcaaacattgcctatggaaaagatggacaa
gcaacagaatctgagatcatagctgctgcagaattggcaaatgctcacaaatttatcagt
tcagcgctccaggggtacgacacaatggttggagagcgtggagctcagttgtcaggaggg
cagaagcagcgtgtggcaatcgctcgtgcaattgtgaaggaccctaggatcctgctgctg
gacgaagcgaccagcgcactggatgctgaatccgagcgagtcgtccaagatgcgctggac
agggtgatggtgaaccggacaacggtgatcgtcgcgcaccgtctatcaacaatacaaaat
gcggatttaatcgcagtcgtaagaaatggggtgatcatcgagaagggaaagcacgatgcc
ttgataaacatcaaggatggcgcatacgcgtccctcctcgcccttcactcggcagcctct
tcatag
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integrated database retrieval system
