KEGG   Panicum virgatum (switchgrass): 120706692
Entry
120706692         CDS       T07260                                 
Name
(RefSeq) serine hydroxymethyltransferase 4-like
  KO
K00600  glycine hydroxymethyltransferase [EC:2.1.2.1]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir00260  Glycine, serine and threonine metabolism
pvir00460  Cyanoamino acid metabolism
pvir00630  Glyoxylate and dicarboxylate metabolism
pvir00670  One carbon pool by folate
pvir01100  Metabolic pathways
pvir01110  Biosynthesis of secondary metabolites
pvir01200  Carbon metabolism
pvir01230  Biosynthesis of amino acids
pvir01240  Biosynthesis of cofactors
pvir04981  Folate transport and metabolism
Module
pvir_M00532  Photorespiration
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    120706692
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    120706692
  09106 Metabolism of other amino acids
   00460 Cyanoamino acid metabolism
    120706692
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    120706692
 09150 Organismal Systems
  09154 Digestive system
   04981 Folate transport and metabolism
    120706692
Enzymes [BR:pvir01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.2  Hydroxymethyl-, formyl- and related transferases
    2.1.2.1  glycine hydroxymethyltransferase
     120706692
SSDB
Motif
Pfam: SHMT Aminotran_1_2 Beta_elim_lyase BRCA2
Other DBs
NCBI-GeneID: 120706692
NCBI-ProteinID: XP_039847328
LinkDB
Position
5K:16897417..16900977
AA seq 471 aa
MDPVATWGLTPLAGADPEVYDLLELEKRRQRRGIELIASENFTSFAVMEALGSPLTNKYS
EGMPGARYYGGNDVIDEIENLCRSRALAAFRLDPAAWGVNVQPYSGSPANFAAYTALLNP
HDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVSATTGYIDYEKLEEKALDF
RPKLIICGGSAYPRDWDYARLRAVADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTT
TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDYEDKINFAVFPSLQGGPHNHQIAALA
VALQQTMTPGFKAYAKQVKANAVAIGNYLMSKGYKMVTDGTENHLVLWDLRPLGLTGNKV
EKLCDLCHITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTICL
NIQKEYGKLLKDFNKGLVNNKDIENLKAEVEKFADSFDMPGFTLESMKYKE
NT seq 1416 nt   +upstreamnt  +downstreamnt
atggaccccgtggccacatggggtctgaccccgctcgccggcgccgacccggaggtctac
gacctcctggagcttgagaagcggcgccagcggcgcggcatcgagctcatcgcctccgag
aacttcacctccttcgccgtcatggaggcgctcggctccccgctcaccaacaagtactcc
gagggcatgcccggcgcccgctactacggcggcaacgacgtcatcgacgagatcgagaac
ctctgccgctcccgcgccctcgccgccttccgcctcgacccggccgcctggggcgtcaat
gtgcagccctactcgggctcccccgccaacttcgccgcctacaccgcgctgctcaacccg
cacgaccggatcatgggcctcgacctcccctccggcggccacctcacccacgggtactac
accgccggcgggaagaagatctccgccacctcgatctacttcgagagcctgccgtacaag
gtgagcgccaccacaggctacatcgactacgagaagctcgaggagaaggccctcgacttc
cgccccaagctcatcatctgcggtggcagcgcctaccccagggactgggactacgccagg
ctcagggccgtcgccgacaaggtcggggcgctgctcctctgcgacatggcgcacatcagc
gggctcgtcgccgcgcaggaagctgcaaatccttttgagtattgtgatgtggttaccact
accacgcacaagtctcttcgcgggccaagggctggcatgattttctacaggaaaggacct
aaacccccaaagaagggccagcctgagggtgctgtgtatgactacgaagacaagatcaac
tttgcggtgttcccatctctgcaaggtgggcctcacaaccaccaaattgcggcacttgct
gttgctctgcagcagactatgacacctggcttcaaagcctatgcaaagcaagtgaaggcg
aatgctgttgccattggaaactatctcatgagcaagggctacaagatggtgactgatgga
actgagaaccaccttgttctctgggatctccgccctcttggcttgactggaaacaaggtt
gaaaagctctgtgacctttgtcacatcacattgaacaagaatgctgtcttcggtgacagc
agtgcattggctccgggtggtgtccgcattggtgcccccgcgatgacctcgaggggtctg
gtggagaaagactttgaacagattggtgagttccttcaccgggcggtgaccatctgcctg
aacatccagaaggagtatggcaagctcctcaaggacttcaacaagggccttgtgaacaac
aaggacattgagaacctcaaggctgaggtggagaagttcgctgactccttcgacatgcct
gggttcacgctcgagagcatgaagtacaaggagtag

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