KEGG   Panicum virgatum (switchgrass): 120706774
Entry
120706774         CDS       T07260                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1-like
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120706774
Spliceosome [BR:pvir03041]
 Complex B
  Other components
   Complex B specific factors
    120706774
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML LisH_TPL Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_DCAF4 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_NWD2_C Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_Vps41 DUF7165 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_VPS8 VPS8_N Beta-prop_HPS5 Nucleoporin_N Beta-prop_IFT122_2nd zf_topless Beta-prop_IP5PC_F Beta-prop_LRRK2 7TMR-HDED
Other DBs
NCBI-GeneID: 120706774
NCBI-ProteinID: XP_039847431
LinkDB
Position
5K:complement(18106646..18112076)
AA seq 517 aa
MASSASTLEIEAHDVVKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIDTFIADINAGR
WDAVLPQVAQLKLPRKKLEDLYEQIVLEMAELRELDTARAILRQTQVMGVMKQEQPERYL
RLEHLLVRTYFDPNEAYQESTKEKRRAQIAQAVASEVSVVPPSRLMALIGQALKWQQHQG
LLPPGTQFDLFRGTAAMKQDEEETYPTTLSHQIKFGKKTHPECARFSPDGQYLVSCSVDG
IIEVWDYISGKLKKDLQYQADESFMMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTG
QCLRRLERSHSKGVTSVTFSRDGTQILSTSFDTTARVHGLKSGKMLKEFRGHNSYVNYAI
FTADGNRVITASSDCTVKVWDAKTTDCLHTFKPPPPLRGGDASVNSVHLFPKNTDHIVVC
SKTSAIFITTLQGQVVKTFSSGKREGGDFVAASVSPKGEWLYCVGEDMNMYCFSYQSGKL
DHLMKVHEKDVIGITHHPHRNLVATYAEDCTMKIWKP
NT seq 1554 nt   +upstreamnt  +downstreamnt
atggcgtcgtcggcgtccaccctcgagatcgaggcccacgacgtggtgaagatagtgttg
cagttctgcaaggagaactcactgcagcagacgttccagacgctgcaaaatgagtgccag
gtctccctcaacactgtcgacagcatcgacaccttcatcgccgacatcaatgccgggcgc
tgggacgcggtgctgccccaggtcgcgcagctcaagctgccgcgcaagaagctcgaggac
ctctatgagcagattgtattggagatggccgagctccgggagcttgacacggcccgcgcc
atcctccggcagacacaggtcatgggcgtcatgaagcaggagcagcctgagcgctacctc
cgccttgaacacctccttgtgcgcacgtatttcgaccccaatgaggcctaccaagaatcc
accaaggagaagcggcgagcgcagatcgctcaagctgttgcttctgaagtctcagtagtc
ccgccatctcggcttatggcattgattggtcaggctttgaaatggcagcaacaccaagga
ctgttgcctcctggcacacagtttgatttgttcagaggaactgctgctatgaagcaagat
gaagaagagacataccctactactttgtctcatcaaataaagtttgggaagaaaacccat
cccgaatgtgctcggttttcacctgatggtcagtaccttgtttcatgctcagtggatgga
atcattgaagtctgggattatattagcgggaagcttaaaaaggatcttcaatatcaagct
gatgaaagttttatgatgcacgatgatgctgtgctatgtgttgattttagtagagattct
gaaatgctggcatccgggtcacaggatggaaagattaaggtttggcgaatacgaactggc
cagtgcttgcgacgccttgagcgctcacattcgaaaggtgttacaagtgtgacattctca
cgtgacggaacccagatattgagtacatcctttgacactacagcgagagtacatggcctc
aagtctggaaagatgctgaaagagttccgaggtcataattcctacgtgaattatgccatc
tttactgctgatggtaaccgcgttattacagcttccagtgattgtactgttaaggtctgg
gatgcaaaaacaacagattgcttgcatactttcaagccaccacctcctttgaggggagga
gatgcatctgttaattctgtccatttatttcccaaaaataccgaccacattgttgtctgt
agtaagacttcggcaatattcatcacgactttacaaggacaggttgtaaagactttctca
tcaggtaaacgggaagggggagactttgttgcagcttcagtttccccaaaaggagaatgg
ctatattgtgttggtgaagacatgaacatgtattgctttagctaccagtctggtaaactg
gatcatctaatgaaggtccatgagaaggatgtcataggcattacacaccatcctcatagg
aatttggttgccacctatgcggaagattgtacgatgaagatatggaagccttga

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