Panicum virgatum (switchgrass): 120706903
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Entry
120706903 CDS
T07260
Name
(RefSeq) protein HASTY 1-like
KO
K14289
exportin-5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120706903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120706903
03036 Chromosome and associated proteins [BR:
pvir03036
]
120706903
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
120706903
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
120706903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exportin-5
Xpo1
PV_NSP1
Motif
Other DBs
NCBI-GeneID:
120706903
NCBI-ProteinID:
XP_039847585
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All DBs
Position
5K:complement(20987092..21017581)
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AA seq
1200 aa
AA seq
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MAADPAAAAAASAVAAISAVMDWRSSPDARAAAFAYLESVKSGDIRALASTSFLLVQKDQ
ASEIRLHGFKMLQHLVRLRWEELSAAERNEFANLTINLISDVVGPHEVWALKSQTAALVA
EVVRREGVALWNTLLPSIVSLSNSGPIEAELVTMILRWLPEDITVHNEDLEGDRRRSLLR
GLTESLPQILPLLYSLLEKHFVAALSEHSKQQIDLAKQHAGTVTAVLNAVNAYAEWAPVT
DLAKHGLIHGCGSLLSYSDFRLHACEFFKVICQRKRLVDVAVAEYDAAICNIFQVLMNIS
QQFLTRSGMQPSSIDESEYEFATCVCETMVALGSSNMQCILADGARTFQFLKQMLEYYQH
YKIALHFQSLLFWLVVLREPSKAKSVARVSGDNFTAGNSASTGDLSTEKEKKGVSLFVTD
EIYSTILDVSFKRMLKNSGSASSGLLELWSEELEGKSDFCNYRTKLLDLIKVIASQRPVI
AAASIVQRINVVFGDANQATKSPRDLDAMEGAQLGLEAVVSAIFDGSADYGKTDLEMKSQ
LHKIFEGILQQLLSLKWTEPNLAVIHGHYLDALGPFLRHYPDAVASVVNKLFELLTSLPI
TFQDPSNNSRLARLQICSSFIRISRAADKALLPHMKNIADTMAYLQGEGRLLRGEHNHLC
EAFLVMASSAGIQQQQEVLAWLLEPLNKMWTQVEWQTAYLSDPTGLTNMFADSQFMWSIY
HTVTFFEKALKRSGIKKSTTTPQAPTTTAAPGYLHPISSHLAWILPPLLRLLRCIHALWA
EPFAQSQTGEIKAAKSMTVAEQASLLGETGKLTKGQVAPADGLLEVQRDGESKENNIKNW
LRGIRDSGYNVLGLAATLGEAFFRCAEASSVTLALMENVQVMEFRHLRQLIHLVIIPFVK
YCPADLWQVWLGNLLQPLFVHCQQALHYSWSSLLHEGRAKVPDSIGNLSGSELKAEVMEE
KLLRDLTREVCSVLWALASPGLNSGLPSLEQLGPSNRMDSLKNLESFASSSLTGFLMLHV
GTALPALRISVEVFSWTDSDAVTKVIPFCGALIHLAVASNQAELRQFVAKDLFSSIIQGL
SVESNSVMSAELVGLCREIYVYLSDRDPAPRQVLLSLPHIKQEDLLAFDDSLSKTASPKE
QKQHMRSLLLLATGNKLRALAAQKTTNVITNITTRNRSSMAHNGIAEEDGQIGLATLSST
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgaccccgccgctgcggcagctgcctcggcggtggctgcgatctccgccgtg
atggactggcgctcctcccccgacgcccgggccgctgccttcgcgtacctcgaatcggtt
aagagcggagacatccgagcattggcaagcacgtcatttctcttggtacagaaggatcag
gcatcagagatccgcttgcacgggttcaagatgttgcagcaccttgtgagattgaggtgg
gaggagctcagtgctgctgagcggaatgaatttgctaatttgaccattaatttgatatca
gatgttgttggccctcatgaggtgtgggccttgaagagtcaaacagctgctttagtagca
gaggtagttagaagggagggagttgctttgtggaataccttactcccatctattgtttct
ctctctaacagtggtccaatcgaggctgagttagttaccatgattctaaggtggcttcca
gaggatatcactgttcataatgaagatttggagggtgatagacggagatctctgttacgc
ggccttaccgagtcactgccacaaatcctgccactgttgtattctctacttgagaaacat
tttgttgctgctttaagtgagcactcaaagcagcaaatagacttggctaaacaacatgca
gggacagtgacagcagttctaaatgctgtcaatgcatatgctgaatgggctcctgtgaca
gatctagccaaacatggtttaattcacggatgtgggtccttgctatcttacagtgatttt
cgcctccatgcttgtgagttttttaaagtaatatgtcagagaaaaagacttgtggatgtg
gcagttgctgagtatgatgctgcaatctgcaacatcttccaggtgttgatgaacatttcg
caacaatttttgaccagatctggcatgcagcccagttctattgatgaaagcgagtacgag
ttcgcaacgtgtgtttgtgagacaatggttgctctgggatcttctaatatgcaatgcata
ctagctgatggagctagaactttccagttcttaaaacaaatgctggagtattaccaacat
tacaagatcgcgcttcatttccagtctttattattttggctggtggtattgagagagcca
tcgaaagctaaatctgttgcacgtgtttctggtgacaattttactgctggtaattctgca
tcgactggtgatttatcaacagaaaaggagaagaaaggggtatccctatttgttactgat
gaaatatacagtacaattttggatgtttctttcaaaagaatgctcaagaacagtggaagt
gcatcttccgggttgttagaactatggagcgaagagcttgaggggaaaagtgacttctgc
aactaccgcaccaaattgttggatctcattaaagtcattgcttcgcaaagacctgtgatt
gctgcagcaagcatcgtccagagaataaatgttgtttttggagatgctaatcaagcaact
aaatccccccgggatcttgatgcaatggaaggggctcagctggggcttgaagcagttgtc
agtgctatatttgatggctcagctgattatggaaagactgatttggagatgaaatcccaa
ctgcacaaaattttcgaaggcatacttcagcagcttctttctttaaagtggacagaacct
aaccttgcggttattcatggtcattatctggatgctttgggtcctttcttgagacattat
ccagatgcagttgccagtgttgttaataagctttttgaactgttgacgtctctccccatc
acatttcaggatccatcaaacaattctcgcttagcaaggttgcagatatgttcatcattc
attcgtatatcaagagctgctgataaagctcttctgcctcacatgaagaacatcgctgat
accatggcttaccttcaaggagagggtcgtttactacgtggtgaacataaccatctatgt
gaagcatttcttgtgatggcatcttctgctgggattcaacagcaacaggaagtccttgcc
tggttacttgaacctctaaacaagatgtggactcaagtggaatggcaaactgcatacttg
tctgaccctactggtttgacaaatatgtttgctgatagccaatttatgtggtcaatttat
cacactgttacattctttgaaaaggcactcaagaggagtggaatcaaaaagtccacaaca
actccacaagcacccaccacaacagcagcacctggttatctgcatccaatatcttcacat
ctagcatggattctgccccctctcttaaggctgctgcgatgcatacatgctctttgggct
gagccgtttgctcagtctcagacaggggaaatcaaagcagcaaaaagcatgactgttgcg
gagcaggctagccttctaggagagacaggtaaacttaccaaaggccaggttgctcctgct
gatggattgctggaagttcaaagagatggagaatccaaggaaaacaacataaaaaactgg
ttgcgcgggatccgagacagcgggtacaatgttttaggattggcagctactcttggggaa
gcattctttcgatgtgcagaggcttcctctgtcacacttgctcttatggagaatgtgcaa
gttatggagtttcggcatttgcgccaacttatccaccttgttattattccatttgttaaa
tattgccctgctgatctatggcaagtgtggctagggaaccttttgcagccattatttgtc
cactgtcagcaagctcttcattattcatggtctagtcttcttcatgagggtcgggctaag
gttccagatagcattggtaatctttctggatcagaactgaaggcagaggtcatggaagag
aagttgctacgtgacttgactcgtgaagtgtgttctgtgctttgggctttagcatcacca
ggcttaaatagtggacttccatccttggaacaacttggaccttccaaccggatggattct
ttgaagaatctggagtcttttgcttcaagttctctcactggatttcttatgcttcatgtt
ggcacagcccttcctgcattgagaatatcggttgaagtgtttagttggactgatagcgat
gctgtgactaaagttatccccttttgtggtgcactgattcaccttgctgttgcttcaaac
caggctgagttgaggcagtttgttgcaaaggatttattttcttctataattcagggttta
tctgttgaatcaaattctgtcatgagtgccgagcttgttgggctttgtcgggagatatat
gtctatctgtctgatagagatcctgcacctaggcaggttcttctttccctcccacacatc
aagcaggaagatctgctagcatttgatgactcgttgagtaaaactgctagtccgaaagag
caaaagcaacatatgcgaagcttacttctgctggctacagggaacaaattaagagctctt
gctgctcagaagacaactaatgtgattaccaacattacaactcgaaataggagctctatg
gcacacaatggaattgctgaagaagatggccaaattggattggccacactatcatcaaca
tga
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