Panicum virgatum (switchgrass): 120706913
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Entry
120706913 CDS
T07260
Name
(RefSeq) probable chromatin-remodeling complex ATPase chain
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120706913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120706913
03036 Chromosome and associated proteins [BR:
pvir03036
]
120706913
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
120706913
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
120706913
RSF complex
120706913
WICH complex
120706913
B-WICH complex
120706913
NORC complex
120706913
BRF complex
120706913
NuRF complex (fruit fly)
120706913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
Myb_DNA-binding
HDA2-3
DEAD
CHDII_SANT-like
AAA_14
ToxN_toxin
Motif
Other DBs
NCBI-GeneID:
120706913
NCBI-ProteinID:
XP_039847601
LinkDB
All DBs
Position
5K:complement(21269530..21279109)
Genome browser
AA seq
1108 aa
AA seq
DB search
MAKPVKYDDEDEEISSSAEEEEEDQSDAAGSGSGEEGDEDEEDAAAPPAGEEEEAEGEGQ
QELEEEVDEEEIEAVTTGAGAEEEEDAGAAAPAEGDDESQSTEDDEAAPGDNGDETDAVV
GKREKARLKELQKKKRQKIQEILDTQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGSQ
SKERKPRGRGRHASKMTEEEEDEEYLKEEEDALAGAGGTRLVSQPSCIKGKMRDYQLAGL
NWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMKEI
QRFCPVLRAVKFLGNPEERNHIRDNLLQPGKFDVCVTSFEMAIKEKTALRRFSWRYIIID
EAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEW
FQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALL
QKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLIENAGKMVLLDK
LLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGS
EKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTE
YTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDE
DIDRIIAKGEETTAELDAKMKKFTEDAIKFKMDDNAELYDFDDEKDENKVDFKKLVSDNW
LEPPRRERKRNYSESEYFKQALRQGAPAKPREPRIPRMPHLHDFQFFNNQRLNELYEKEV
RYLMQANQKKDTIDGEDEDQLEPLTAEEQEEKEQLLEEGFASWTRRDFNTFIRACEKYGR
NDIKSIASEMEGKTEEEVQRYAKVFKERYKELSDYDRIIKNIERGEARISRKDEIMRAIG
KKLDRYKNPWLELKIQYGQNKGKFYNEECDRFMLCMVHKLGYGNWDELKAAFRMSPLFRF
DWFVKSRTTQELARRCDTLIRLVEKENQEYDEQERQARKEKRLAKNMTPTKRGASRNSEG
ETTPSNSFKRRRQSLMDDYVGSGRRKRG
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccggtgaagtacgacgacgaggacgaggagatctcgtcctccgccgaggag
gaggaggaggaccagtccgacgccgccggctccggatctggcgaggagggggacgaggac
gaggaggacgccgcggcacctcccgcgggggaggaggaggaggctgagggggaggggcag
caggagttggaggaggaggtcgatgaggaggagatcgaggccgtcactaccggcgccggc
gccgaggaggaggaggacgccggcgctgcggcccctgcggaaggcgatgacgagtcccag
tccaccgaggacgacgaggcggccccgggcgacaacggcgacgagactgatgcagtggtc
gggaagcgtgagaaagcaaggctaaaggagctccagaagaagaagaggcaaaaaatccaa
gaaatattggatactcaaaatgctgccattgatgctgacatgaacaataaagggaaggga
cgattgaaataccttcttcagcagacggaaatatttgctcactttgcaaaaggaagtcaa
tctaaagagagaaaaccacgtgggcggggacgacatgcgtcgaagatgacggaagaagag
gaagatgaagaataccttaaggaggaggaagatgcccttgctggtgcagggggaacacga
ttagtttctcagccttcatgcattaaaggaaaaatgcgagactaccagttggctgggctt
aattggctcatacggttgtatgagaatggtatcaatgggattttagctgatgagatgggc
cttgggaaaactcttcaaaccatttcactgctgggctacctgcatgaattcagaggtata
actggtcctcacatggttgttgcaccgaagtccacacttggcaactggatgaaggaaatt
cagcgtttttgccctgtccttcgtgctgtgaagttcttgggaaatccagaagagaggaac
catataagggacaatttgctacagcctgggaaatttgatgtgtgtgtgactagttttgaa
atggcaatcaaagaaaaaaccgcattaaggcgtttcagctggcggtacattattattgat
gaagctcaccggataaaaaatgagaattctcttctatcgaagactatgaggatttacaac
actaattatcgtctcctcatcacaggtactccactgcagaataatctccatgagctttgg
gctctccttaacttcttgctacctgaaatatttagctccgctgagacctttgatgaatgg
tttcaaatttctggagaaaatgatcaacaggaggtggtccagcagctccataaggtcctt
cgcccatttcttcttcggaggcttaagtctgatgtagaaaagggtttacctccgaagaag
gaaaccatacttaaagttggaatgtctcagatgcaaaagcagtactatcgtgctctgctt
cagaaagatttagaggttattaatgctggtggtgaacgcaagcgattgcttaacattgcc
atgcaattgcgcaaatgttgcaaccatccatatttattccaaggagctgaacctggcccg
ccctacacaactggtgaacatctaattgagaatgcaggaaaaatggtgctgttagataaa
ttgctgcccaagctaaaggaacgtgattccagagtccttattttttcacagatgaccagg
cttttggatatcttggaagattatctgatgtacagagggtatcagtattgccgcattgat
ggaaatactggcggagaagatcgtgatgcatccattgaagcttttaacaagccaggaagt
gagaagtttgttttcttgctttcaactagggcaggtggccttggtatcaacttggccact
gctgatgttgtggttctttatgacagcgattggaacccacaagctgatctgcaagctcaa
gaccgtgcgcataggataggccagaagaaagaggttcaagtttttcgcttttgcacagag
tatactattgaggaaaaagtgattgagagagcatacaagaagcttgcgttggatgctttg
gttattcagcaaggacgtttggcagagcagaaaactgtcaataaggatgatcttctgcaa
atggtgaggtttggtgctgaaatggttttcagttctaaagacagtacaataacagatgag
gatatagaccgtatcatagctaaaggagaggagacaacagcagaacttgatgccaaaatg
aaaaagttcactgaggatgccattaaatttaagatggatgataacgctgaattgtatgat
tttgatgatgagaaggatgaaaacaaggttgatttcaagaaacttgtcagtgataactgg
ctcgagccacctagaagagaaagaaagaggaactactccgagtctgagtactttaagcaa
gctcttcgccaaggtgcaccagcaaagcctagggaaccaaggattccaagaatgccacac
ttgcatgatttccagttcttcaacaaccaaaggctaaatgaattgtatgaaaaggaagtg
cgatacctcatgcaagcaaaccagaagaaagatactattgatggtgaagacgaagatcag
ttggagcctttgactgcagaggaacaggaagagaaggagcagttactagaagagggtttt
gcatcatggacaaggagagacttcaacacctttattcgtgcatgtgagaaatatggtcga
aatgacataaaaagcatagcctctgaaatggaagggaaaacagaagaggaggtccagcga
tatgctaaagttttcaaggagcgatacaaggaattgagtgattatgatagaattatcaag
aatattgaaaggggagaagcaagaatatcccgtaaggatgagattatgagggcaattgga
aagaagctagaccgctacaagaacccatggttagagttgaaaattcagtatggccaaaat
aaagggaagttctataatgaggaatgtgaccgttttatgctttgtatggtgcataaactt
ggctatgggaattgggatgaactgaaagctgccttccgcatgtctcccttgttccgattc
gattggtttgtgaagtccagaactacacaagagttggctaggcgttgtgacacccttatc
cgactggttgagaaagagaatcaagagtatgatgagcaagaaaggcaggcaaggaaggag
aaaaggcttgctaagaacatgactccaacgaagcgaggggcatcaagaaattcggagggt
gagacaactccatcgaattcattcaagaggcggcggcagtcccttatggatgattacgtg
ggctcaggaaggcgtaaaagagggtga
DBGET
integrated database retrieval system
