Panicum virgatum (switchgrass): 120706954
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Entry
120706954 CDS
T07260
Name
(RefSeq) DNA mismatch repair protein PMS1-like
KO
K10858
DNA mismatch repair protein PMS2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120706954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120706954
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
120706954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120706954
NCBI-ProteinID:
XP_039847658
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All DBs
Position
1K:complement(39347426..39354455)
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AA seq
1006 aa
AA seq
DB search
MAGGGGGGWRGDSSPAIKPISKAVVHRICSGQVIFNLSSAVKELVENSLDAGATSVEVSL
KAYGEEWFKVADNGFGISPANFQALALKHHTSKISDFSDLGSVVTFGFRGEALSSLCALG
KLTVETRTKDEPVGTHLEFEHSGVVANQTKIARQVGTTVTVEKLFSTLPVRSKEFSRNIR
KEYGKVISLLNAYALIAKGVRLLCTNTVGKNSKMVVLRTQGSSSMKDNIITIFGLNTFKC
LEPFSVTISDGCQVEGYLSKPGPGTGRNSGDRQFFYVNGRPIDMPKITKLVNELYRSSNA
KQYPVAILDFRIPTTSYDVNVAPDKRKIFFSSESMILRSLREAVENMYSPQQCSFLINHV
EEPEKEEDTTDGHNEDTNLIAADNVSSPDNSDDNEETDIEDQISPENQKEPSSATKVAIE
ATSRDLSPLSRGTAAQADRSVWLPSFSYEQPKRLPKEGKDYASGTNHFRTGLAAKSTQSP
TVQSSIMNFVSLNKRKHEDDCNLISEAPVLRRGTCIEQVRETSLEANFVSPNKQNNIDDC
SLISEAPVLRRGTCLEQVRRTSLEGNFASSNKQKHEDKCSIISETPVLRRKACSEQVGRT
VEANSPAALRSCTSNISEFNLPLETNSLKHHSPQSFVSVRADVSPQHSKPPNTVTHGAQV
SSPCDVHTTEPDVDVQHDRCLPISGAPNKYSEVEHQNTMSDSPSLDAHDYDAGDAVCSAS
VQYPSMQFTVAELRRRRKNGFRISHANKANSLEKATRCYKAATLDIYVPSGDEAKSNSLA
AATNELDRLFSKDDFGEMEVVGQFNLGFIIGKLNQDLFIVDQHAADEKYNFEGLSQSTTL
NIQPLLQPLRLDLSPEEEVVVSMNMSTFQKKWFVLEEDLHASPGNHYLLKAVPFSKNITF
GVQDVKELISMLADSQGDCSIISSYKLDKSDSVCPSRVRAMLASRACRMSTMIGDPLTKV
EMRKILKNLTGLRSPWNCPHGRPTMRHLADLHAIRNKDSAGVDVAL
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggctggaggagggggaggaggctggcgcggcgattcctcgccggcgatcaagcccata
agcaaggccgtggtgcaccgcatctgctccggccaggtcatcttcaacctctcctccgcc
gtgaaggagctcgtcgagaacagcctcgacgccggcgccacgtccgtcgaggtcagcctc
aaggcctacggcgaggagtggttcaaggtcgccgacaacggcttcggcatctcgcccgcc
aacttccaggcgcttgcacttaagcaccacacttccaagatatcggatttctccgacctt
ggatccgtggtcacattcggattccggggtgaagcgctgagctcgctctgcgcgctgggg
aaactgacggttgagacgaggaccaaggatgagcccgtcgggacgcatttggagtttgag
cactccggcgtggtggccaaccagacgaaaatcgcacggcaggttggaaccacggtgaca
gtcgagaagttgttctccaccttgccggtccggagcaaggagtttagcaggaacattcgg
aaagagtatgggaaagtgatctccctgttgaatgcttacgccttgattgccaaaggggtc
agattgctttgcactaataccgtcggaaaaaattctaaaatggtggtgcttaggactcaa
ggaagcagttcaatgaaagacaatatcattaccatatttggtctgaacactttcaagtgt
cttgagccctttagtgttaccatctcagatggctgccaagtagaaggctatctctcaaaa
cctggacctggtaccggtcgcaattcaggagatagacaattcttctatgtcaatggcaga
cctatcgatatgccaaagatcactaaacttgtcaatgagctatacagaagctcaaatgca
aagcaatatcctgtggctatcctggatttccgtattccaactacatcctatgatgtgaat
gtagcacctgacaagagaaaaattttcttctcctctgagagtatgattctgcgatcatta
cgggaagctgttgaaaatatgtactcccctcaacaatgcagtttcttgatcaatcatgtt
gaagaacctgaaaaggaagaggatactactgatggccataatgaagacacaaatttgata
gcagcagacaatgtttcatctcctgacaatagtgatgacaatgaagaaacagacattgag
gatcagatttcaccagagaaccagaaagagccttcttcagcgacaaaggtagcaattgaa
gccacatctagagatttgagccccctgtctagaggcacagctgcccaggctgatagatct
gtttggcttccatccttctcatatgaacaaccaaaaagattgcctaaagaaggaaaagat
tatgcatcaggaacaaatcattttagaactggtcttgctgcaaaatctacccaatcacct
actgttcaatcttctattatgaactttgtatcactaaacaagcgcaagcatgaagatgat
tgcaatcttatttcggaagctccagtgctgaggagagggacatgcatagaacaagtgagg
gaaacaagtttagaagccaactttgtatcaccaaacaagcagaacaacatagatgattgc
agtcttatttctgaagctccggtgctgagaagaggtacttgcttagaacaggtgaggaga
acaagtttagaaggaaactttgcttcatcaaataagcagaagcacgaagataaatgcagt
attatctctgaaactccagtgttgagaagaaaagcatgctcagaacaagtggggagaaca
gtagaagcaaattcaccagctgcattgagatcatgcacatctaatatttctgagttcaat
ttgcctctggaaacaaactctttaaaacatcattctccacaatcatttgtatctgtgagg
gcagatgtttcaccacagcattcaaaaccgcctaatactgtgacccatggtgcacaagta
tcaagtccatgtgatgttcacactacagaacctgatgtggatgtgcagcatgatcgatgc
cttccaatttctggtgctcccaataaatattcagaagttgaacatcagaatacaatgagc
gatagtccttcgcttgatgctcatgattatgatgcaggcgatgcagtatgttctgcatct
gtacaatatcccagtatgcaatttactgttgctgagcttaggagaagaagaaagaatggt
tttaggatatcacatgcaaataaagcaaatagtcttgagaaagctacaaggtgctataaa
gccgcaacactggatatttatgtaccctcaggtgacgaggcaaaatctaattcattagct
gcagccaccaatgaattggacaggcttttcagtaaagatgattttggagaaatggaggtt
gttgggcaatttaatcttggttttatcattggaaagcttaaccaggatctgtttattgta
gatcagcatgctgctgatgagaagtacaactttgagggcctatcacaatcgacaactttg
aacatacagcctcttctccagccactgaggcttgatctatcaccagaggaagaagtagtt
gtttctatgaacatgagcacttttcagaaaaaatggtttgtcttggaagaagatttgcat
gcttctcctggtaaccattatcttttgaaggctgtgcctttcagcaaaaatattacattt
ggtgttcaagatgtaaaggagttgatctccatgcttgctgatagtcaaggagattgttca
ataatcagtagctacaagctcgataaaagtgattctgtttgcccatcgagggttcgtgct
atgttggcttcgagggcttgccgaatgtctactatgatcggcgatccactaacaaaagtc
gagatgagaaagatacttaaaaacctaacaggattaaggtccccttggaattgtccacat
gggaggccaacaatgcgtcacctggctgatctgcatgctataagaaacaaagattctgca
ggagtagatgtggcgttgtga
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