Panicum virgatum (switchgrass): 120706979
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Entry
120706979 CDS
T07260
Name
(RefSeq) light-mediated development protein DET1-like
KO
K10571
de-etiolated-1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120706979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120706979
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120706979
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Det1
Motif
Other DBs
NCBI-GeneID:
120706979
NCBI-ProteinID:
XP_039847666
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Position
5K:complement(24616045..24632113)
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AA seq
382 aa
AA seq
DB search
MECHQFGLFATSTAQSNDSTAAEGAIHGVPSIEKITFYLVRLEDGVVLDEKAFCNDFINL
AHSIGAYLYEDLLCIVSLRYQTIHILQIRDSGNLVEVRRIGAFCREDDELFLHSHVQSGY
GGSFLPGIKQRLLSYIFRKTWNEVPDQTLKVQHLKKFYFHFQDYVDLIIWKVQFLDRHHL
FIKFGSVDGGVSRSTDQNLAFFAVYNMETTDIVSLYQNSSEELYSLFEQFYDHFHANPQD
SSHGKFISSHSNDIHAFDQLCTIKNKASSSSQFVKKMMASLPYTCQSQSPSPYFDLSLFR
YDEKLISAIDRHRHCTEHPIKFISVRSPNVVKFKIKPGSDSGAADSRAKRISSFLFHPFF
PLALSIQQTYMQPTVVNIHFRR
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggaatgccatcaatttggcttattcgcaacatcaaccgcacaaagtaatgattcaact
gccgctgagggtgcaatacatggcgtgccatcaattgagaaaataactttctatcttgtg
aggctagaagatggcgtcgtactggatgaaaaggctttctgcaatgattttatcaatctg
gcacatagtattggtgcttacttgtatgaagacctgctttgtattgtttcgctgagatat
caaacaatacatatcctacagatccgagattcaggcaaccttgttgaggtacgcagaatt
ggcgctttctgccgagaagatgatgagctatttcttcactcacatgttcagagtggttat
gggggttcttttcttcctggcatcaagcaacggttgttgtcgtatatttttcgcaagaca
tggaacgaagttccagatcagactttgaaggtccagcatctcaagaagttctattttcac
ttccaagactatgttgatcttatcatatggaaggtacagtttttggatcgccatcaccta
tttatcaagttcggtagtgtggatggaggggtttctcgaagcaccgatcaaaacttagca
ttctttgccgtgtataacatggagacaactgatatcgtttcgctttaccagaattcatcg
gaggagctctattccttgtttgaacaattttatgaccattttcatgccaatccacaagat
tcatcgcatggaaaatttatctcgtcgcactccaatgatattcatgcttttgatcaactt
tgcacaataaaaaataaagcaagcagctcctcacagtttgtgaaaaagatgatggcatcg
ttgccttacacatgccaatcacagagtccttcaccatactttgatctatccctttttagg
tatgatgagaagctgatttcagcaattgatcggcatcggcattgcacggagcatccaata
aaatttatatcagtgaggtcaccaaatgttgtcaaatttaagatcaagccaggttcggat
tctggtgctgctgacagcagagcgaaaagaatctcatccttcttgtttcacccatttttc
ccacttgcactttcaattcagcagacttatatgcagccaactgttgtcaatatccatttc
aggagatag
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