Panicum virgatum (switchgrass): 120707021
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Entry
120707021 CDS
T07260
Name
(RefSeq) AMSH-like ubiquitin thioesterase 3
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120707021
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120707021
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120707021
04121 Ubiquitin system [BR:
pvir04121
]
120707021
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120707021
Peptidases and inhibitors [BR:
pvir01002
]
Metallo peptidases
Family M67
120707021
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Others
Others
120707021
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
120707021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
120707021
NCBI-ProteinID:
XP_039847719
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All DBs
Position
5K:27523558..27538775
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AA seq
515 aa
AA seq
DB search
MATVPPRRARGDVNIESLARPVAVDHRITIQYYFRIADNLLRQADVYREEKNLLDLYIIL
LRYSSLLLETIPKHHDYIAFKAREKEFLKKGPHNSKKLHNVLNELESLKPVVQKQFANCN
SGGAEEPNGVHGTYAASSGMEQHIPSPYMPKSLAGSPTGLQQKSFSSSNLPAASVQNVQP
ERQLIKRYSTLPYPKEETLSRHSVLGPNGLHGQWAGPVTGTRIEYPCNPELTQTDISSLV
PSILNQDSLHGPNTVSQDRNDDMLSVLSLDDGRWSLPVEEPTSVSPGLEAEFSQLNIRQP
CPPPVLAQVHSQRGPIPPSRVADPRPGLATSDTGRYQNLHVPVALMECFLRVAEANTAKN
LETCGILAGSLKKRTFYVTTLIIPKQKSTSDSCQATNEEEIFEFQDKGSLLPLGWIHTHP
TQTCFLSSIDLHNHYAYQIMLPEAIAIVMAPTDTTRKHGIFHLTDPCGMGVIHDCDATGF
HPHEEPLDGTPIYEHCSHVYVNPNVKFEMVDLRAV
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggccacggtacctcctcgccgggctaggggagacgtaaatatcgagtccctggcgcgg
ccggtcgctgtcgaccaccgcatcaccatccagtactacttccgcatcgccgacaacctc
cttcgccaggctgatgtgtatcgagaggagaagaaccttctggacctgtacattatcctc
ttgagatattcgagcttgttgcttgagacgatacccaagcatcacgattacattgcattt
aaggcgagagaaaaggaattcctgaagaaaggcccccacaactctaagaaacttcataat
gttctcaatgagctagaatccctgaagccagttgtgcagaaacaatttgccaactgtaat
agcggtggtgcagaggaacctaatggtgtgcatggaacctatgctgcaagcagtgggatg
gagcagcatatcccaagcccgtatatgccaaagtcattggcgggaagccctactggacta
cagcagaaatcgttctctagttcaaaccttccagcagcatcagtgcagaatgttcaacct
gagagacaactaatcaaacgatattctactctgccttatccaaaagaggaaacattatca
agacactcagtactaggaccaaatgggcttcatggccaatgggcagggcctgttactggt
accaggattgagtatccatgtaatcctgaattgacccaaactgatatctcaagtttagtg
ccatctatcttgaaccaggacagcttgcatggtcccaatacagtatcacaggacagaaat
gatgatatgctgtctgttctctcacttgatgatggaagatggtctttgccagtagaagaa
ccaacctcagtatctccgggtttggaagcagagttttcccagctgaatataagacaacct
tgtccccctcctgtcctagcacaggtgcattctcagcgtggaccgattcctccatcaaga
gttgctgatccaagaccaggacttgctacctctgacactggacgctatcagaatttgcat
gtgccagtggcattaatggagtgcttcctgagggttgctgaggcaaataccgcaaaaaat
ttggaaacctgtgggattcttgcgggtagcctgaaaaaacgaactttctatgtgacgacg
ctgataattcctaaacagaaatcaacatctgattcatgtcaagctacaaatgaagaagaa
atttttgaattccaggacaagggctcacttttacctcttggttggattcacacacatcca
acacagacctgcttcctatcttccattgatcttcataatcattatgcgtatcagatcatg
ctacctgaagcgattgccattgttatggcaccaactgacacaacaagaaagcatggcata
tttcatctcacggatccatgtggcatgggtgtgatccatgattgtgatgctactggattc
catccccatgaggagcccctagatggcacgccaatctacgagcattgctcccatgtgtac
gtgaacccgaacgtgaaatttgagatggttgacctacgtgcagtgtga
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