Panicum virgatum (switchgrass): 120707109
Help
Entry
120707109 CDS
T07260
Name
(RefSeq) calcium permeable stress-gated cation channel 1-like isoform X1
KO
K21989
calcium permeable stress-gated cation channel
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120707109
Transporters [BR:
pvir02000
]
Other transporters
Pores ion channels [TC:
1
]
120707109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSN1_7TM
PHM7_cyt
RSN1_TM
Motif
Other DBs
NCBI-GeneID:
120707109
NCBI-ProteinID:
XP_039847818
LinkDB
All DBs
Position
5K:complement(31371936..31387719)
Genome browser
AA seq
780 aa
AA seq
DB search
MADIRDIGLSAALNILGAISFLLAFTFLRLQPINDRVYFPKWYLKGARESPSHGGTFVRK
FVNLDMHSYLKFLSWMPAALKMPEDELISHAGLDSAVYLRIYLVGRVYKWAIDMRCRLKI
FAPISILAFSVLVPVNWTNDTLEFSKVQHNNIDKLSISNIPVGSKRFIAHLSMAYVFTFW
TCYVLLREYEIVAQMRLRFLASEKRRPDQFKVLVRNIPPDPDESIGELVEHFFLVNHPDH
YLTHQVVFNANKLAKLVKEKTKMQNWLDYYQLKFERNASKRPTTKTGFLGCFGAKVDAIE
YYKSEIEWIENEEAEEREKIVKDPKSVVPAAFVSFRSRWGAAVCAQTQQTSNPTVWLTEW
APEPRDVYWDNLSIPFVSLTVRRLIVAVAFFFLNFFYVIPIAFVQSLANLEGIEKAAPFL
KPLVEIPTIKSFIQGFLPGIALKIFLILLPTILMFMSKVEGLTSISSLERRSASKYYIFI
FFNVFLASIIAGSALEQLKSYNHQSANEIPRTVGVAIPMKATFFITYVMVDGWAGVAGAI
LRLKPLVIFHLKNFFLVKTEKDREEAMDPGSIGFDSNEPQIQLYFLLGLVYAVVTPFLLP
FILIFFGFAYVVYRHQIINVYNQEYESAAAFWPSVHGRIITALIISQFLLLGLLSTKGAG
QSTPVLLVLPVVTFYFHKYCKNRYEPTFVKCPLQEAMKKDTLERAREPGFDLKGYLMNAY
IHPVFKGDDDDEKFSIVDEPEAEQVLVATKRQSRRNTPVPSKYNSSDSSSLPEIVNDQRL
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggctgatattagagatataggcctctctgcggctctcaatatattgggggccatatca
ttcctgctggcatttaccttcctacgactgcagccaatcaatgatagggtttacttccca
aaatggtacctcaaaggtgcaagagagagcccaagtcatgggggtacatttgttcggaaa
tttgtcaatttggacatgcattcgtacttgaagttcttaagttggatgcccgctgctctc
aaaatgcccgaggatgagttgattagccatgcagggcttgattcagctgtctatctgcgg
atttacttagttgggagggtctacaaatgggcaatcgacatgcgttgcaggcttaaaata
tttgctccaatctcaattctagcattcagtgttcttgtccctgttaattggaccaatgat
actttggaattctcgaaggtacaacacaacaacattgataaactttcgatatcaaatata
cctgttggatcgaaaaggtttatagcccatttgtcaatggcttatgttttcacattttgg
acctgctatgtactgttacgtgagtatgaaatcgttgcacaaatgagactgcgttttctt
gcatcagagaaacgcagaccagaccagttcaaggtccttgtgcgtaatataccgcctgat
ccagatgaatcaatcggtgagcttgttgaacatttctttcttgtgaatcatcctgatcac
tatctgacacaccaggttgttttcaatgcaaataagcttgcaaaattggttaaagaaaag
acgaagatgcagaattggcttgactactatcagctgaagtttgaaagaaatgcatctaag
aggcctactactaagactggttttcttggttgttttggtgccaaggtggatgctattgag
tactacaaatcagaaattgagtggatagaaaatgaagaagcagaagagcgtgaaaagatt
gtaaaagatcccaaatcagttgtcccagcagcatttgtttccttccgatcacgttggggt
gcagcagtttgtgctcagacacaacaaaccagtaatccaactgtttggttgactgaatgg
gctccagaacctcgagatgtgtactgggataatttgtctattccatttgtctcccttaca
gttcgaaggttgatagtggcagtggcattcttcttcctgaacttcttttatgtgatccca
atagcatttgttcagtctcttgcaaatcttgaagggattgagaaggcagctccatttctg
aagcctctggttgaaatacctactattaaatcattcatccaaggtttccttcctggaatt
gctctgaagatcttccttatactgctcccgaccatattaatgttcatgtctaaggttgag
ggattgacatcaatatcttcactggaaagaagatctgcatccaaatattatatcttcata
tttttcaatgtgtttctggcaagcattattgcaggatctgctttagagcagctaaaaagc
tataatcatcaatctgcaaatgaaataccaaggacagttggtgtagcaattccaatgaag
gcaaccttttttataacatatgtaatggtcgatggttgggctggggtagctggtgcaata
ttaagattgaagccactggtaatcttccacttgaaaaactttttcttggtcaagactgag
aaagacagagaagaggcaatggaccctggaagtattggttttgactcaaatgaacctcaa
attcagctctattttttacttggtcttgtctatgctgtggtgacaccatttttgctccct
ttcatattgatattcttcgggtttgcatacgttgtataccgccaccagataataaatgtg
tacaatcaagaatatgagagtgcagcagcattttggccaagtgttcatgggcgtataatc
acagcattgatcatatcacagttcctcctccttggattacttagcacaaaaggcgctggc
cagtcaaccccggtgctccttgttcttccggttgtaaccttttatttccacaagtattgc
aagaatcgctatgaacctacttttgtgaaatgcccgttacaggaggcaatgaagaaggat
accctagaacgtgcaagagagccaggatttgatctcaaaggatatctgatgaatgcctac
atccacccagtattcaaaggtgacgacgacgacgagaagttctcaattgtcgatgaacca
gaggcagagcaagtcctggtggcaaccaagcggcaatccaggcggaacacccctgtccct
agtaaatacaacagctcggattcatcttctctgcctgaaattgtaaatgatcagcggctg
taa
DBGET
integrated database retrieval system
