Panicum virgatum (switchgrass): 120707122
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Entry
120707122 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120707122 isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120707122
03041 Spliceosome [BR:
pvir03041
]
120707122
03036 Chromosome and associated proteins [BR:
pvir03036
]
120707122
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120707122
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120707122
mRNA cycle factors
Common to processing body (P body) and stress granule
120707122
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120707122
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120707122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Motif
Other DBs
NCBI-GeneID:
120707122
NCBI-ProteinID:
XP_039847847
LinkDB
All DBs
Position
5K:complement(32546796..32587591)
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AA seq
1055 aa
AA seq
DB search
MAAYGGGGARGITPLRSCRTGPSASAPHSGSAPPYHVPEVGELTEVVQGALEIGYGEKFL
DVRIEMCGEGPAALEEASSRAEGVHAYRDSARLVYGEPAALQSDDAKTISMAGRVLLACA
QKVVCFPVACGLVVEAALRGGRGCRSWDRGRRLFDHASQRRVLLLAASRVLGAQMNNQDK
TADIDVDIPGPIVHMVKKSQISHGAIEYLVIDEAGRILDMMFESQTRMIVYMMNMPSFPP
DRQVADSLRFWLFSKGFPATEICGDRTQQRLASGFSSNVIFVTVRRVGSSTYLMVLIEFV
IDGMKRGFLLCPVGNQFVGAANRKLHELLSLFYVEMQWETDSLRYWLYSKGFPATLIFGD
TCPMYNQQCDLESGVDILVATPGYHVDFVEGWWFSFEGIKYLVMDGGDTEKTKIVDMKNR
SKDSVNEKGKTFSFQTGLRVVVPKTGALMYNQMLYSDFLSKNIFITVGTVRSSTDLILQK
IEFVNDGEKRVLLLDLLHNQSVGMASSMEADSLRFCLFSKGFPATGICGDRTQQRSIVLS
NYMCTTVGTVGSDTDMFEQKIEFVDNLDKRCFLQDLLCKKSGSLCGPLVPSFQSAAWLYL
FIAIMFLLIPRSSQLPITDNTTEICPAPYMQFKRPAPVYVPRLFKPEDLGYKEILMLDNT
STAKSYAQQWALTLGPTISFLANFAPLITAHGISNVAAKNILLQGISCLLFAQTNLSWTF
YLHNDSAGTVVYYSAIFAALLNAFWSVFFWKNSSLDAKQTMLALLACVIMGTISYACLLM
AGVFALICLLCGHFFRIKCMCHVQKFHGFTCAMSFLGLGGSLCSLYGVGIIGPVTIPKVF
SAISFVVRMIDIPLQVYFRCCIEQTETTAVGEGDKQRRELALNEPLLHPGPNISQNNVDV
DRIDVLDDEQSELSLGLNDGDMHTSTDTPRSSALSGHSSGSISDSSTEAGSQAETSMAQA
ERNGRTDVASEDVIPSSFEQAYGVEDCEAAPSEFNGHETMETRSVQANMDGSIEVASIQN
ISNSVKQASDGKDSGLAHSELTTRMPGKLENDNKN
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggcggcatacggtggcggcggcgcgcggggaatcactcctctccgttcctgcaggacg
gggccgtccgcctcagctcctcacagcggcagcgctccaccctaccacgtgccggaggtt
ggcgagctcaccgaggtggtgcaaggcgcactcgagatcggctacggggagaagttcctc
gacgtgcggatcgagatgtgcggcgagggcccggcggctctcgaggaggcgagcagccgc
gcggaaggtgtccacgcctaccgggattcggcgcgattggtgtacggggaacctgcagcc
ctgcagagcgacgacgcgaagaccatctcgatggcggggagggtcctcctggcgtgcgcg
cagaaggtggtctgcttccccgtcgcctgcgggctggtggttgaagcggcgctgcgagga
ggtcgcgggtgccggagctgggaccggggacggcgcttattcgaccacgcctcgcagcgg
cgcgtgcttctcctcgcggccagcagagtacttggagcccagatgaacaatcaagataaa
actgctgatattgatgttgatatacctggacccattgtgcacatggtcaaaaaatcacag
atctctcatggggcaattgagtacctagtaattgatgaggctggaaggatactggatatg
atgtttgagtcgcagacaagaatgatagtttatatgatgaacatgccaagcttcccaccg
gatagacaggtagctgactcattgcggttttggctattctcaaaaggtttccctgcaaca
gagatctgtggtgacagaacacagcagagattggcttctggattctcatcaaatgttata
tttgttactgtccggagggttgggtcaagcacttacctaatggtgctgattgagtttgtt
attgatgggatgaaaagaggcttcctgctatgtcctgtaggcaaccaatttgttggtgcg
gctaacagaaagctacatgaacttctaagtctgttctatgtggagatgcagtgggaaacc
gactcattgcggtattggctatactcaaaaggcttccctgcaacactaatatttggtgac
acatgtccaatgtataaccagcagtgtgatcttgagagcggtgtagatattcttgttgca
acacctggataccatgtggattttgttgaaggatggtggttctcttttgaaggaatcaag
tacctggttatggatggtggtgacactgagaaaacaaagatagttgatatgaagaataga
tcaaaagattctgtaaatgagaagggcaaaacgttctcttttcaaactggactgagagtt
gtggtacccaagacaggagctttaatgtataaccagatgctgtattcagatttcttgtca
aaaaatatatttatcactgtcgggactgtcaggtcaagcactgatcttattctgcagaaa
attgagtttgttaatgatggggagaaaagagtccttctgctagacctgttacataaccag
tctgttggtatggctagtagcatggaagctgattcattgcggttttgtctattctcaaaa
ggtttccctgcaacaggcatctgtggtgacagaacacagcagagatcgattgtcttgtca
aattacatgtgtacaactgtcggaactgtggggtcagacactgatatgtttgagcagaaa
attgaatttgtcgataacttggacaaaagatgcttcttgcaagatcttctatgcaagaaa
tcgggttctctctgcggaccactcgttccctcatttcaatctgctgcatggctgtacctg
ttcattgcaattatgtttttgctaattccaagatctagtcagttgccaataacagataac
acaacagaaatttgcccagcaccatatatgcagttcaagaggcctgctcctgtttatgtg
ccacgcctgttcaagccagaggatcttggatacaaagaaattctgatgttagataatact
tctacggcaaaaagctatgctcaacaatgggctttaacacttggaccgactatttcattc
ttggcaaactttgctccactaataaccgcacatgggatcagtaatgtcgctgccaaaaac
atactgctccaaggaatttcctgtctcctttttgcccaaacgaacctatcctggactttt
tacctgcacaatgatagtgcaggcacagtggtttactactcagcaatctttgctgctctc
ttgaacgccttctggtctgttttcttctggaaaaactcaagtcttgatgccaagcaaaca
atgcttgcccttcttgcgtgtgttatcatgggaactatcagctatgcttgcttgcttatg
gcaggtgtatttgctcttatttgtcttctgtgcggccatttcttccgtatcaaatgcatg
tgtcatgtccagaaatttcatgggtttacatgcgcaatgtcttttttaggtttagggggt
tctctatgcagtctatatggagtaggtattattggtccggtgacaattcctaaggttttt
tctgcaatttcatttgttgtccgtatgattgatatacccctgcaagtgtatttccgttgt
tgcattgaacaaactgagacaacagctgtgggtgaaggagataagcagagaagagagctt
gcacttaatgagcctttgctacatcctggtccaaatatctcacaaaacaatgttgatgtt
gatcggatagatgtgttggatgatgagcaaagtgaactgtccttgggtctcaacgatggt
gacatgcatacctcgacagatactcctagaagctctgcattgtcaggacattcatctggg
agcatctcagactccagtactgaagctggctcacaggcggagacaagtatggcacaggca
gaaaggaatggaagaactgatgttgcatcggaagatgtgattccaagttcatttgagcag
gcatacggggttgaagactgtgaagcagctccttcagagtttaatggtcatgagacaatg
gagacgagatcagtgcaggcgaacatggatggaagtattgaggttgcatcaatacagaat
atatcaaattcagtcaagcaagcatcagatggcaaagactctggattggctcattctgag
cttaccacaaggatgcctggaaagttagaaaatgataataagaattaa
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