Panicum virgatum (switchgrass): 120707162
Help
Entry
120707162 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120707162
KO
K24155
rabconnectin-3a
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120707162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120707162
Membrane trafficking [BR:
pvir04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
120707162
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
120707162
RAVE complex
120707162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_C
WD40_CDC20-Fz
Beta-prop_EML
Beta-prop_IFT140_1st
EIF3I
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
120707162
NCBI-ProteinID:
XP_039847911
LinkDB
All DBs
Position
5K:33772739..33794796
Genome browser
AA seq
2466 aa
AA seq
DB search
MGERDTLPPLPLALGPPHLIPPAPTHDPRTIAFLPDLGGLPWVAYAAGSFLVVSHLPSPS
RDDTSDGAGDDGCSPFFRQVIDLHAPVSAVAWCGCGSAEVAAAAGNSVSIFQPAPAASSQ
GSFGWLLRWSITETFAIAAVAWTGAGDGIVAVGAGVSMWARVQSSWQLAWRSIQKVPQSL
VSSTQFVQGPVATVAAVAPAECSMPVLVFLNDAKRGLEQAELVHPQPVCMIQWRPWSLHV
SDRSEIRREILMTCCLDGTVRLWSEDELVKSKKRHGLQISFSVIAVIEVNNTLNGVLGVD
ITIRWSVESGSVVSRDEEDKFELFSGDSRESQVGNCEWLVSVGPGPCVNFWAVHCLDDVF
PAPRYPRISLWKKNKLQGWWESYVKLAPPKSLEQSIFVDAIISRRLCSEPPTKCSLLHLL
PDDSFVWSALSNSLLLDFGTHVSIESTNSISCCLTKPVKQDGHTGSIRQVSVHPYSCEIQ
IAVSMDSNRMLFFWSLSTFSTLIPTLHAPTYPLWKLLCKFDLRNSSEDVEYSCLCWAPSV
SRDYRFFVLGGENGADCFIVSIKKEVLSCQRIFTIPFLGERNAEGPPDSIHTIPLASKCS
GCFVNNSFLVVCIWRNSFEAFSWKVVLHSESQLDSGKCLCGFDESSLSTTNQVRHVTCFD
SETFSAVIYKGPSVFPSSLEGEHPTCISVVPLNNTVLPLQHEPYRTVPSYHIATGCSDGT
VKLWKMSCADNSLQTEKEGHIWELVGMYGAHCGPVSMVVLSNCGRVVTVCRNLKKNSTSI
HIWEAVKLVGDGSFLLEDAMILQDYIVGIEGLSLGDGRFLLAVYLPNELRIYSHKHPSFP
NVLHNDNSKEEHLWSCVALSHSHHDIAGFLWGPKATMTLVHENHLSLFSSWLVTGADEYT
TQIRACPIDVLPCANNFNETAFGKKLPENYGSRTIGSNGVLQTDQDDSPCSHSLWNLLDI
ADKLSGPVASYNPRALIQYLYSGEWKRANAALQHLIQSMKASEASKITSKCSSCRKSCHS
IPELPLSEYFVGTMLNNISNKGFLWGEDRSNTTFNLLSPSNSFLYGDGNLGISTATSVSK
KSEIVELLDKNYSSYGISDTERTEILAISDLMLEITDQSRSSPYKSLDEAGRRFWVAVQF
RQLHALRRSGYSSSSEGFLDSSSIAWAFQSDCQDDLLNSVLPLEPTWSEMQKLGIGLWYT
NVSQLRTRMEKLARLQYLKSKDPKDCALLYIALNRIKVLVGLFKISRDEKDKRLYEFLSR
NFQEERHKAAALKNAYVLMGRHQWELAIAFFLLGDDFSSAVNVCAKNLQDEQLAIVICRL
VEGSGGPLECNLISNVLLPRSVEKGDNWLSSLLEWMLGNYYQSINRLFGCHTKLEIDESK
ILGAPNVFSDPEVGQYCAILSTKNGFRNCVGEAVSAKLSKLSFAMAACALNKCGLPLEAL
ECLCSNLGIDGKESINVPSGGDHKIFDGMLNPFSVSKNWLSSSVISDFESDLKITMASKY
LSHLLRNHLFCSQCNASLSEDKVLNDYDSHQIEELTRDVTAVMLIFDRRFSLKFADIAEK
ILIFCCHDGLLFLAYALLWECKSPDAAIDHHGLECCSLRPINYLLLVSFKESCKFLSRHV
VYSSFMRFVLNMELTNTTACTPKENHEYIISGLSNYLNASSLLLRLDNGGNNILDNSSSM
LTVMDLLKYIIQFSFSWLYCDIKELLIMINPVLAASVKGESFQVLLDLLKHPMLHRSHDV
PLNAEGGMPSASIHKIQLEKSEISNHLIDEKWHLLGASLWIRLTSVMQHYLREFVEKEKR
EHETGGSDSEFKGSFSSIAAKFTTSSIHFVSSSLVKLHASFLRKNLPINSHSSVLFWLEC
NSSQQWSGSNSYDQLSRILQLADSENMDVLFNNLWEISVNSVDICNAFVNDGVNCFSLSS
INVTRSWKDIRGTAVECKKNSTQRIGKEHNHGLRSKNNDQRQGFADEASSNGEVFPETKR
KELIVQKDFQSPLELLRRSGELLEAICLNSINEKQAAIATNRKGLVFFNWSDKKHYKKFT
EYVWSGSDWPLDGWAGCESTPTPTFISSGVGLGRKKGSQLSSGGATIGLGSLAKPGRDLT
GGGAFGIPGYAGIGASGFGWGEPEGFEDFVDPPATLENIHSRALSRHPSLPLFLVGSSNT
HVYLWEFGKDSAMATYVVLPAANIPPPYALASISAVQFDYYGQRFATAALDGTVCTWQVE
VGGRSNVHSTDSSLCFDSHASDVSYVSASGSVVASAGSNSNGANVVIWDTLSPPGTCQTS
IMCHDGGARSLSVFDSDRGCGSISPLVVTGGKSGDVALHDFRFLSTGKSQHNRISTEHGV
KAPSRHDTKSGTSGGTANGMVWHIPKAHLGSVTKVTTIPNTSLFLTGSKDGDVKLWDAKN
SQLVFHWPKLHERHTFFQPTSRGFGGVVRAAVTDLQVLSHGFISCGGDGSVKLVQLKNDL
PVVDEQ
NT seq
7401 nt
NT seq
+upstream
nt +downstream
nt
atgggggagcgagacacgcttccgccgttgcccctcgccctcggcccgccgcatctgatc
ccgccggcgcccacccacgacccccgcaccatcgccttcctccccgacctaggtggcctc
ccctgggtcgcctacgccgcgggatccttcctcgtagtatcccacctcccttccccttca
cgggacgacaccagcgacggcgccggggatgacggctgctccccgttcttccgccaggtc
atagacctccacgccccagtgtccgccgttgcctggtgcggttgcgggagcgcagaggtc
gccgccgccgcaggcaattccgtctccatcttccagccggcgcccgctgcctcttcccaa
ggttcgtttggttggctcctgagatggtctatcaccgagacatttgctatcgctgctgtg
gcatggacgggcgcgggcgatggcattgtggcagttggtgcaggtgtgtccatgtgggcc
agagtgcagtcctcctggcagctcgcctggaggtctattcagaaggtgccacaatccctt
gtctcctctacccagttcgtgcagggccctgtcgcgactgtcgcagctgttgctccggct
gagtgcagtatgcctgttcttgtgtttctgaatgatgccaaaaggggactggagcaagct
gagcttgtgcatccgcagcctgtttgcatgatccagtggcgaccctggtcgttacatgtc
agtgatcggtccgagatcaggagagagatcctcatgacttgctgcttagatggcactgtc
cggctttggagtgaggatgagttggtcaagtcgaagaagcgacatggtttgcaaatatca
ttcagcgtcattgcagtaatcgaggtgaacaacactctgaatggagtccttggagttgat
attactatcagatggtctgtggaatctggcagtgttgtgtcgagagatgaagaagataaa
tttgagttgttttcaggtgattcgagggagagccaagttggcaactgtgagtggcttgtt
agtgtcggcccagggccttgtgttaacttttgggctgtccattgtctagatgatgtattt
ccagcaccaaggtacccacggattagtttatggaaaaagaacaaactgcagggctggtgg
gagtcctatgttaaattggctcctccaaaatctctggagcagtcaatatttgttgatgct
atcatatcaagaaggctatgttctgaaccacctacaaaatgctctttgctgcatttgctg
cctgatgattcgttcgtgtggtcagccttatccaacagtttgttactggattttgggaca
catgtttcaattgaatcaactaatagtatatcatgttgtttgacaaaacctgtcaaacaa
gatgggcatacgggtagcatcagacaggtctctgtccatccatatagctgtgaaatacag
atagctgtttcaatggattcaaacagaatgttatttttctggtcactgtcaaccttttca
actctcataccaacattgcatgcacctacatatccattatggaagcttttgtgcaaattt
gatttgcgtaacagttctgaagatgtggagtactcatgcttgtgttgggcaccttctgtt
agtcgtgattatagattttttgtccttggaggcgaaaatggagctgactgtttcatagtc
agtattaagaaagaggttctttcatgccagaggattttcacaatccctttccttggagag
agaaatgcagaaggaccacctgacagcattcataccataccattggcttctaaatgcagc
gggtgttttgttaacaacagcttcctagtagtatgcatatggaggaatagcttcgaagct
ttctcatggaaagtagtcttgcattcggaaagtcaacttgacagtggaaaatgtttgtgt
ggttttgatgagagctctctttctaccacaaaccaagtgaggcatgtaacttgctttgac
agtgaaactttttcagcagttatttataaaggtccttcagtctttccttctagcctggag
ggagaacatcccacatgcatttctgtagtgccgctcaacaatacagtcttgcctttacaa
catgaaccttacagaactgttcctagttatcatattgctactgggtgctctgatggcact
gtgaaactttggaagatgtcttgtgcagataactctttgcagactgagaaagagggacac
atctgggaactagtaggcatgtatggtgctcactgtggaccagttagtatggttgtacta
tcaaattgtggtagagttgtaactgtttgcagaaatttgaagaagaatagcacctctatt
catatctgggaagcagttaaactcgttggggatggtagttttctgctagaagatgcaatg
atcttgcaagactatattgttggtatagaggggctatccttaggtgatggacgatttcta
cttgcagtttatctacctaacgagctgcgtatatattctcataagcacccttccttccca
aatgtgctgcacaatgataattcaaaagaagagcatctttggagctgtgttgcattatcc
cactctcatcatgacattgctggctttctttgggggccaaaggccactatgacccttgtt
catgagaatcatctttcactcttcagttcatggctagtaacaggagctgatgagtacact
acccagatacgtgcttgcccaatagatgtgttaccatgcgcaaacaatttcaatgaaact
gcttttggtaaaaagttaccagaaaattatggtagcaggactattggtagcaatggtgta
ttgcaaacagaccaagatgatagtccctgttctcatagtttatggaacttgttggatata
gctgataaactaagcggacctgtggcatcgtataacccaagagcacttatacagtatctt
tattcaggtgaatggaaacgtgcgaatgctgctctgcagcatcttattcaatccatgaaa
gcaagtgaagcatcaaagatcacgtcaaagtgcagttcatgccgaaaatcatgccatagt
attccagaacttcctttatctgaatactttgtaggaaccatgttaaacaacatttctaac
aaaggttttctgtggggtgaagacagaagtaacacaacctttaatttgctgtcaccttca
aattcatttctttatggggatggtaatttaggtatcagcactgccactagtgtgtctaaa
aaatcagagatagttgagctccttgataagaactacagttcgtatggcataagtgacact
gagagaactgagatacttgcaatttctgatcttatgttagaaatcactgatcagagccgt
tcctctccctacaaaagccttgatgaagcaggaagaaggttctgggttgctgtgcagttc
cgacagcttcatgctctaaggagatctggatattcatctagtagtgaagggttccttgat
tcctcttcgatagcatgggccttccaatctgattgtcaggatgatctacttaattctgtg
cttcctttagagccaacttggtcagagatgcaaaagcttggtataggattatggtatacc
aatgtgtcccagctaaggacaaggatggaaaagttggcaaggttacaatatcttaaaagc
aaggaccccaaggactgcgctctgctctacatagcattgaacagaataaaagtgttggtg
ggtctcttcaagattagcagagatgaaaaggataaacgtctatatgagtttctctccagg
aacttccaggaagaaagacacaaagctgctgctctaaaaaatgcttacgtactaatggga
aggcatcaatgggagcttgctatagcatttttcctgcttggtgatgatttttcatcagca
gtcaatgtttgtgcaaagaaccttcaagatgaacaacttgctattgtaatttgtcggctt
gttgaaggatccggagggcccctggagtgtaatctcatttctaatgtccttcttcctcgt
tcagttgagaaaggagacaactggctttcaagcctgcttgagtggatgttagggaactat
tatcagtctatcaatagattatttggttgccataccaagttggagattgacgagtccaaa
atccttggtgctccaaatgtgttttcagacccagaagtgggtcagtattgtgcaattctc
tcgacaaaaaatggttttagaaactgtgttggtgaagctgtatctgcaaagctatctaag
ctttcatttgcaatggctgcatgtgccttgaacaagtgtggactacctcttgaagcactt
gaatgcctatgttctaatttgggcatagatggcaaggaaagcataaatgtaccttctggt
ggagatcacaagatttttgatggaatgctgaaccctttctctgtgtctaaaaattggcta
tcttcatctgtcattagtgactttgagtccgatcttaaaataactatggcttcaaaatat
ctatcccaccttctgagaaatcacttgttctgttcacaatgcaatgcatcattatctgaa
gacaaggtccttaatgactacgacagtcatcaaattgaagaacttacacgtgatgttaca
gcagtaatgttgatattcgatagaaggttctcattaaaatttgctgacatagctgagaag
attctaatcttttgttgtcatgatggtttattgtttcttgcgtatgccttgttatgggag
tgtaaatcaccagatgctgccattgaccatcacggtcttgaatgctgctctctccgtccg
attaattatctgttattggtttcattcaaagagagctgcaaatttcttagtcgtcatgtt
gtctattcctccttcatgcgtttcgttctgaatatggaactcacaaatactactgcatgc
acacctaaagagaatcatgagtacattatatcagggttgtcaaactacctgaatgccagc
agcttgcttctaaggcttgacaatggtggaaacaatattctagataacagttcatctatg
cttacagttatggacctgcttaagtacattatacagttttccttttcttggctgtattgt
gacataaaggaattgctcatcatgatcaatccagtcctagctgcttctgttaaaggggag
tcctttcaagtactattagatctgttgaagcatcctatgctccacagaagtcatgatgta
ccattgaatgcagaagggggaatgcccagcgcttcaattcataagatacagctagaaaag
agcgaaatttcaaatcatttaattgatgagaagtggcatttgttaggtgcttctttgtgg
attcggttgacatctgtaatgcaacattatttgagggagtttgttgaaaaagagaaacgt
gaacatgaaactggtggtagtgattcagagttcaagggttctttctcttcaattgctgca
aagtttactacgagttccatacattttgtgtcatcttcgttagttaaactgcacgcatca
ttcttgaggaagaatttaccaataaattcacattctagcgtgctcttctggttagaatgt
aattcgtcccagcaatggtcgggcagcaatagttatgatcagctttcaagaattttgcag
cttgcagacagtgagaatatggatgtgttgtttaataatttgtgggaaatttctgttaat
tctgtggatatttgtaatgcttttgtgaatgacggggttaattgcttttcattgagcagc
ataaatgttactagatcttggaaggatataagaggtactgcagttgagtgcaaaaaaaat
agtactcaaagaattggaaaagaacataaccatggacttcgctcgaagaacaatgatcaa
agacagggatttgctgatgaagcctcttctaatggagaagtctttcctgaaactaaaagg
aaggagttgatagtacaaaaagattttcaaagcccattggaacttctaaggagaagtggg
gaacttcttgaggcgatatgtcttaactcaatcaatgagaaacaagctgctatcgctact
aaccgaaagggccttgttttcttcaactggagtgacaagaaacattacaagaaatttaca
gaatatgtctggtctggatctgattggccattagatggctgggctggttgtgaatctaca
ccaactccaactttcatttcatctggtgttggtcttggcagaaaaaaaggatcacaactt
agttcaggtggagcaactattggtttaggttcattggcgaaacctggaagagatctaact
ggtggcggagcatttggaattccaggttatgctggtattggggcctctgggtttgggtgg
ggtgaacctgaaggatttgaggatttcgtcgatcctccagcaacacttgagaacatccat
tcaagagcattatcccgacatccttcgttaccattatttcttgttggttcaagcaatacc
catgtgtatctatgggagtttggtaaagatagtgccatggctacatatgttgttctgcct
gctgctaacattccaccaccttatgcactagcttccatatcagctgttcaatttgattat
tacggacagcggtttgccactgctgcattagatggtaccgtttgtacatggcaagttgag
gtgggtggaagaagtaacgttcattctacagattcatccctatgctttgatagccatgcc
tcggatgtctcttatgtgtctgcaagtggatcagttgtcgcttctgctggatctaattca
aatggtgcaaatgttgttatctgggataccctatctccgcctggcacatgtcaaacttct
atcatgtgtcatgatggaggagcacggtctctttcagtgtttgatagtgatagaggttgt
gggtctatctcaccactggttgtaactggtgggaaaagtggagatgtagctttgcatgat
ttccgattcctttctactggaaagtcccagcataatagaatctccactgagcatggtgtc
aaggcaccttccaggcacgataccaaatctggtacttctggtggtactgctaatgggatg
gtctggcatataccaaaggctcatctaggaagtgtcaccaaggtaacaaccatcccaaat
acgagtttgttcttaactggaagcaaagatggagatgtaaagctttgggatgcgaaaaat
tctcagctggtctttcactggccaaagttgcatgaacggcacaccttttttcagccaact
tccaggggttttggcggtgttgttagggccgctgtaacagacctccaggtgctatcccat
ggtttcatttcgtgtggaggtgatggctctgtgaagctcgttcagctaaaaaatgacctt
cctgtggtagatgaacaataa
DBGET
integrated database retrieval system
