Panicum virgatum (switchgrass): 120707239
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Entry
120707239 CDS
T07260
Name
(RefSeq) protein PIGMENT DEFECTIVE 338, chloroplastic-like isoform X1
KO
K02945
small subunit ribosomal protein S1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
120707239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
pvir03011
]
120707239
Ribosome [BR:
pvir03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
120707239
Bacteria
120707239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
Motif
Other DBs
NCBI-GeneID:
120707239
NCBI-ProteinID:
XP_039848016
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All DBs
Position
5K:complement(37032377..37035422)
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AA seq
441 aa
AA seq
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MPPPSPSPAPPCRGLLPPLSKPQPMLAVAAKSLASRQAKVKARARAQPVALARSTSIDDA
LAAGFVSLLNASPGLDSDAAGAESRLYDPEPGDFAVGVVVSGTEARLDVAVGADHLATLL
AKELLPLDRGGGGFAARAASPRPGSVGVVASPAVDEEATRKHNRGSRALVAPGTVVFAEV
LGRTLSGRPLLSARRLFRRLAWHRARQIMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPK
VELMDRIGTFTDLKNKVGCSIRVCIARLDEETNDLIISEKKAWEMTYLREGTLLQGSVRK
IFPYGAQVRIAGTNRSGLLHISNISRGRVLSVNGVLKIDDEVKVLVIKSNVPDKIALSIA
DLESAPGLFLSDREKVFSEAEEMAKRYREQLPVISQNTMLDDSLPGETLPFDDEAKLYAN
WKWFKFLHHNKPGDNSSRDLP
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgccgtcgccgtcgccggcgccgccgtgtcggggcctcctcccgcccctctct
aagccgcagcccatgctagccgttgccgccaaatccttagcctcgaggcaggccaaggtc
aaggcccgagcgcgagctcagccggtcgcgctcgccaggtccacgagcatcgacgacgcg
ctcgccgccggcttcgtcagcctcctgaatgccagccccgggctggactcggatgccgcc
ggcgcagagtccaggctgtacgaccccgagccgggggatttcgcggtcggggtcgtggtc
tccggcaccgaggcgcgcctcgacgtcgcggtcggcgccgaccacctcgccacgctgctc
gccaaagagctcctcccgctcgaccgcggtggcggtggcttcgcggcacgagcggcctcg
cctcggccagggagcgtgggggtcgtggcgagccccgccgtggacgaggaggcgaccagg
aagcataatcgcgggagcagggcactggtggcgcccggcacggtggtgttcgcggaggtg
ctcggccggacgctcagtgggcggccgctgctgtcggcgcgacggctcttccgacgcctc
gcgtggcaccgcgccagacagattatgcaactcgatgagccaattgaggttaaaatttac
gagtggaacaccgggggtctactgacaagaatcgaggggctgagagcattccttcctaaa
gttgagcttatggacaggataggtacatttacagacttgaaaaacaaagttggctgcagc
attcgtgtgtgcattgcaaggctcgatgaagaaactaatgacctgataattagtgagaag
aaagcatgggaaatgacttatcttagagaaggaactctcctacaaggaagtgttcgcaaa
atttttccatatggtgcacaagttaggattgctgggacaaacagaagtggattattgcac
atatcaaacattagtagaggtcgtgttttgtcagtaaacggcgtcctaaagatagatgac
gaggtaaaagttctcgtgatcaagtcaaatgtcccagacaaaatcgcactgagcatagcg
gaccttgagagtgcacctggtttatttctttcagacagagagaaagtgttctcagaagct
gaggaaatggcgaagagatacagggagcaacttccagttatatctcagaacaccatgtta
gatgatagccttccaggagaaacgctaccatttgatgacgaagctaaactgtacgcgaac
tggaaatggttcaaatttctgcatcataacaaacctggtgacaacagcagcagggatctg
ccatag
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