Panicum virgatum (switchgrass): 120707290
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Entry
120707290 CDS
T07260
Name
(RefSeq) amino acid transporter AVT1I-like
KO
K15015
solute carrier family 32 (vesicular inhibitory amino acid transporter)
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
120707290
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120707290
Transporters [BR:
pvir02000
]
Solute carrier family (SLC)
SLC32: Vesicular inhibitory amino acid transporter
120707290
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GFIT
Motif
Pfam:
Aa_trans
Motif
Other DBs
NCBI-GeneID:
120707290
NCBI-ProteinID:
XP_039848097
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Position
5K:37966855..37968435
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AA seq
428 aa
AA seq
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MEDKNARTAVLPVSTLTEPLLPGKGEDLEAAQLPSYGGASFSRTCLNLTNAVSGIGVLSM
PYAVAQGGWLSLALFALVGAICYYTGTLIERCMRADPAAVASYPDIGAFAFGSAGRRAVA
AFMYVELYLVAISFLVLEGDNLNKLFPGATVDLLGYRLQGKQLFIALAAAVVLPTTWLKN
LGVLAYVSAIGLVASAVLTVSLVWAGVAGTGFHRNSTSVLNLSGLPTSLGLYFVCFTGHA
VFPTIYSSMRNSKHFSKVLLISSVLCSVNYGLTAMLGYMIYGDDVQSQVTLNLPSGKLYT
KVAILMTLINPLAKYALLAAPITAAIEEKFSVPCGSGPARVAISTVVVVSTAVVASTVPF
FGYLMSFIGSFLSVMATVIFPSLCFLKIYKAKGIRRIEIAAITGILIIGVFVAVTGTYTS
VRQIIGTF
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaagaacgctcgcaccgcggtgctgccagtgagcacgctcaccgagccgctc
ctgcccggaaaaggcgaggaccttgaggcggcgcagctcccgtcctacggcggcgcgtcc
ttctcccgaacgtgcctcaacctcaccaacgccgtgtccgggatcggcgtcctctccatg
ccgtacgcggtggcgcagggcgggtggctcagcctcgcgctcttcgccctcgtcggcgcc
atctgctactacaccggcacgctcatcgagcgctgcatgcgcgccgaccccgccgccgtc
gccagctaccccgacatcggcgccttcgccttcgggtccgccggccggagggccgtcgcc
gccttcatgtacgtcgagctctacctcgtcgccatcagcttcctcgtcctcgagggcgac
aacctcaacaagctcttccccggcgccaccgtggacctcctcggctaccggctgcaaggg
aagcagctgttcatcgcgctcgccgccgccgtcgtgctgcccaccacatggctcaagaac
ctcggcgtgctcgcctatgtgtcggcgatcgggctcgtcgcgtcggcggtcctcacggtg
tcgctggtctgggccggcgtcgctgggaccgggttccatcggaacagcaccagcgtcctc
aacctgagcggcctgccgacctcgctgggcctctacttcgtctgcttcaccggccacgcc
gtcttcccgacgatctactcctccatgaggaacagcaagcacttctccaaggttctgctc
atctcctccgtgctctgcagcgtcaactacggactcacagcgatgctgggctacatgatc
tacggcgacgacgtgcagtcgcaggtcacgctgaacctgccctcgggaaagctctacacc
aaggtcgccatcctgatgacgctgatcaacccgctggccaagtacgcgctgctggccgca
ccaataacggcggcgatcgaggaaaagttctcggtgccgtgcggcagcgggccggcgagg
gtggccatcagcaccgtggtggttgtcagcacggcggtggtggcctcgacggtgccgttc
ttcggctacctcatgtcgttcatcggatcgttcctcagcgtcatggcgacagtcatattc
cccagcctctgcttccttaagatctacaaggccaaggggattcgccgcatcgagatcgcg
gcgatcaccggcatcctgatcatcggagtgttcgtagccgtcaccggcacctacacttcc
gtgcggcaaattataggcactttctaa
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