Panicum virgatum (switchgrass): 120707300
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Entry
120707300 CDS
T07260
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120707300
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120707300
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120707300
03036 Chromosome and associated proteins [BR:
pvir03036
]
120707300
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120707300
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120707300
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120707300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
Me-amine-dh_H
ComGF
Motif
Other DBs
NCBI-GeneID:
120707300
NCBI-ProteinID:
XP_039848112
LinkDB
All DBs
Position
5K:38078538..38091076
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AA seq
513 aa
AA seq
DB search
MNGAAAPERSPSASPPPPSPAQAPPPASPTQPLEWRFSQVFGERSAGEEVQDVDIISAIE
FNKSGHHLATGDRGGRVVLFEKTDVKDHACRKDAEKADYSISRHPEFRYKTEFQSHEPEF
DYLKSLEIEEKINQIKWCQAANSALFLLSTNDKTIKFWKVQEKKVKKVSEMNLDRTTAAA
NGSPSGVGYLSPSLANGNALKPGGYALLRMPVVVTSQETSLAASCRRVYAHAHDYHINSI
SNNSDGETFISADDLRINLWNFEISSQSFNIIDVKPTNMEDLTEVITSAEFHPTHCNTLA
YSSSKGSIRLVDLRQSALCDTHSQIFEQHEAPGSRSFFTEIIASISDIKFSKDGRHILSR
DYMTLKLWDVKMNSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCQSGDGLRVATGSYS
NIFRVFGVGTGSNEATTLEATRNPTRRQLQNPTRAARSLNTLTRAVRRGGESTGIDANGN
SYDLSTKLLHLAWHPSENLIACAAANSLYMYYA
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgccgcggcaccggagcgctcgccctcggcctcgcccccgcccccgtccccg
gcccaggcgccgccgccggcctcgcccacgcagccgctcgagtggaggttctcccaggtg
ttcggcgagcgcagcgccggggaggaggtccaggatgttgacatcatctcagcaatagag
ttcaataaatcaggacatcatcttgccactggggatagaggtggacgagttgttttgttt
gaaaagacagatgtcaaagatcatgcttgtagaaaagatgctgagaaagctgattattct
atcagcaggcatcctgaatttcgctacaaaactgagtttcaaagccatgaaccagagttt
gattaccttaagagcttggaaattgaagagaaaatcaaccaaataaagtggtgccaagca
gcaaatagcgcattgtttctgctgtcgacaaatgacaaaacaataaagttttggaaggtc
caagaaaagaaggtaaaaaaggtatctgagatgaatttggaccgtacaactgctgctgca
aatggtagtcctagtggtgtgggctatctgagcccatctctcgctaatggcaatgcttta
aagcctggtggatatgctttgcttcgcatgcctgtggtagttacaagccaggaaacgagt
cttgccgcaagttgccgaagagtatatgctcatgcacatgactaccatataaactccata
tcaaataacagtgacggtgaaacatttatatcagctgatgatttgcggataaatctttgg
aattttgaaatcagcagtcagagtttcaatattattgatgttaagcccacaaacatggag
gatctaactgaggtgataacatctgctgagttccacccaactcattgcaatacattagct
tatagtagctcaaagggttccattcggcttgttgatctgcggcagtcagcactttgtgac
actcattcacaaatctttgagcagcatgaggccccaggttcaaggtcatttttcactgag
attatagcctcaatttcggacataaagttctccaaggatgggaggcatattcttagtcgt
gattacatgactctgaagctttgggatgttaagatgaattctggcccagttgcaacattc
caggttcatgagtatctaaggcctaagttatgtgatttatatgaaaatgactcaattttc
gacaaatttgaatgttgtcaaagtggtgatggattacgtgtagcaactggttcctacagc
aacattttccgtgtgtttggtgttggtactggtagcaatgaggcaacaacacttgaagca
actcgaaaccctacaaggaggcagctccagaatcccacaagggctgccagatccctgaat
actctgacaagggctgttagacgaggtggagaaagcactggaatagatgccaatggaaat
tcctatgacctcagcacaaagttgctccatttggcttggcacccatctgaaaatctaatt
gcgtgtgctgcagccaacagcttgtacatgtactatgcataa
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