Panicum virgatum (switchgrass): 120707318
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Entry
120707318 CDS
T07260
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120707318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120707318
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120707318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
WDR55
TPR_VPS8_2
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR5
Beta-prop_HPS5
TPR_Vps41
WD40_CDC20-Fz
WD40_WDHD1_1st
Clathrin
ANAPC4_WD40
Beta-prop_WDR3_1st
Beta-prop_TEP1_2nd
Beta-prop_THOC3
WD40
WD40_Prp19
zf-RING_Vps41
Beta-prop_RIG_2nd
zf_RING_Vps8
WD40_Gbeta
Motif
Other DBs
NCBI-GeneID:
120707318
NCBI-ProteinID:
XP_039848167
LinkDB
All DBs
Position
1K:2208790..2227141
Genome browser
AA seq
1910 aa
AA seq
DB search
MPSASSPAMASQHPPPRQEGLGQELDLDAFLPSSPTSSAASDADADHRRAVDDLLLLLSS
SDSDSEESTPTPSPSTSSRALARVEAPAPPAEPSPLRSPSASSSPRRSTSASPSETLSSL
VARTFSSNGAFSSSSKPLPSLFRGVRPSPKPGAALAAAAAASRAVLTPHAAAIKSRRSVS
APVEKLLEEGSGSEASEDLPSTGSLEAEVEEKGNTEVVPQPTEQTVSGNGTDEFEEEKHG
EVEIEESSEFMKLVEASILDSVVADDFSEHEQTAENGDLVETDKIEDQNAIVYEENANDQ
TGDDDCMQSAQGMDPDGSVSEESFDDDQEADKSGSIIEDQVESESLIDKVIEERTEQLEI
SRKAEKNAEKKQKVSMKPLEWAEELEKRQASFGQHWEEGAAAQPMQLEGIGKGPPAIGYM
QIEMDNPVTRAMSSPSFRLDHGSPQVLAVHRNYIAMGTSKGAVIVIPSKYSIHQADDTDA
KMLFFWNQGEKTQSPVTAMCFNQQGDLLLVGHGDGHMTIWDVQKATAAKVIYGEHMAPVV
HVCFIRQSKAITGDSKGVVLLHTFSIIPVINRLTVKGTQRLFDGNTGIVLSACPLLVDES
FGFSNSSSQANQTTSSSGSGLGSMMGGVVGGVVGVDSGWKFFNESSSTVEDGVVVMFIMH
HHALVVRLRTNIDHVDHIETFSRPDGAREGSIAYAAWKYTSSFSDSSSLDEERVSWLALA
WDRQVQVAKFVKSKIVKHKEWKLDSASIGVAWLDDQMLVVLNLRGQLCLFSKDGSELRRT
TFVPDGLLFDDTILHHAHFSNKFGNPERHFNSSVAVRGATVYILGPTFLTVSRLLPWKER
IEALKRAGDWMGALDMAMRLYDGQTQGVVDLPRTVDSIREAIMPYLVELLLSYISYVFEY
ISIALSSHTGKGGETDVLIEADRSLLTQREEQYARVGGVAVEYCVHIGRNDILFDTVFSK
FVAAQSGGMFLEVLEPYILKDMLGSLPPEIMQSLVEHYSGKGWLQRVEQCILHMDISSLD
FNQVVRLCREHGLYGALIYLFNQGLNDFRTPLEELLTVIQNSNRKDAASTGYRMLVYLKY
CFQGLAFPPGHGIIPRSRLHSVREELLQFLLEESKSLTSEVFKSFSASCGKCPNICYLLW
MDTEATLEVLKCAFAQDSFEPRDELSGTVNAPSSEDEDGIIAGNPGSQNNMVQNVLDAII
DIVGLENEMIQSVVMGTADSEFWPSEKEFGYLIEFVSFFVSHKRAIASKRVVMHILTYLT
SSYDDTRARTQKEKEVLQLFNAVPRNDWNSDFVLNLCSDAHFHQACGLIFTTRNQNLAAL
DSYMKDKEEPFHAFIFIDKRLFKLADDEALSFRTTVISRFPELVKLSREYAFVLVFDHFC
DKVQQILAELRSDRHSLFLFLKTAIEVHLSGKLDFSELSVRNNQTVELQYSSTDLEDYQQ
RLSNVKLDHNPVSIDDELVELYLELLCQYERRSVLKFLETFDSYRLERCLHLCLDYGVTD
AAAFLQERVGDVGSALALILAGLDEKISVFISSVENTSSGVASKSTSETKQPDIALEMNE
AHPVLDALHASIGLCQRNSQRLDPEESQSLWFQLLDSFSEPLKKLYGSNDVNEKSARSKG
SEAPSEHLKGKALPQRMRISAKQRCLNVLRKIFSQFVGEIIEAMAGYIPLPAIMAKLLSD
NGNQEFGDFKLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGFAPQTFVC
CICNCSLSKEGAISAIRLFSCGHATHLQCESEQSRSSSRESKDGCPVCLSTSNTQAQNRS
PMVDNGLVKFSGAEHEVSHGIHQTHEVDHAERSRGLQHMSRYEILSNLQKGQKSFHIETV
PPLKLAPPAIYHEKIQKSTTSVGEPSKHLVRSQKPRKIWQMKEQKSSVFR
NT seq
5733 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggcgtcgtcgccggcgatggcgtcgcagcatccgccgccgcggcaggagggt
ttagggcaggagctcgacctcgacgcgttcctcccctcctctccgacctcgtccgcggcc
tccgacgccgacgccgaccaccgccgcgccgtcgacgacctcctgctgctcctctcctcg
tcggactccgactccgaggagtccacccccacccccagccccagcaccagcagccgagcc
ctagcccgcgtagaagccccggcgccgcccgctgagccctcgccgctgcgttccccgtcc
gcgtcctcgtccccgaggagatccacatccgcctcgccgtcggagaccctctcctccctc
gtcgcgagaaccttctccagcaacggcgccttctcttcctcctcgaagccgctgccctcg
ctcttccgcggcgtccgacccagccccaagcctggcgccgcgctagccgccgctgccgcg
gcatcccgcgcggtccttaccccgcacgcggccgcaatcaagtcccgccgatcagtctca
gcgcccgtcgagaagctcctggaggagggcagtggctccgaggcctccgaggacctccct
tccaccggaagcttggaagcagaggtggaagaaaaggggaacacggaagtggttcctcaa
cccacagagcaaactgtcagtgggaatgggactgatgaatttgaagaggagaaacatgga
gaagtggaaattgaagagagctctgagtttatgaagctggtggaggcgagtatccttgat
tctgtagtcgctgacgatttcagtgagcatgagcaaacagctgaaaatggtgatttggtg
gaaactgacaaaattgaggatcaaaatgcgattgtctatgaggaaaatgcaaatgaccaa
actggagatgatgattgtatgcaatcagctcagggtatggatccagatggatctgtttct
gaggaaagttttgatgatgaccaggaagctgacaagtccggcagcattatcgaagaccaa
gtggaatctgagagtttaattgataaggtgatcgaggagaggacggagcagctggagatc
agcaggaaggctgagaagaatgcagagaagaaacagaaggtgtcaatgaaaccgttggag
tgggcagaggagcttgagaagaggcaggcatcgtttggtcaacattgggaagaaggagca
gctgcgcaacccatgcaactagaggggattggaaagggcccaccagctattggttacatg
caaattgagatggacaacccagtaactcgtgccatgtcctcaccatcgtttaggctggac
catggttctccccaggtgctggcagttcataggaactatatagcgatgggtacgtctaaa
ggtgctgtcattgtcattccaagcaaatactccattcatcaagctgatgatacagatgca
aagatgctgttcttttggaaccaaggtgagaagactcaatcaccagtgactgccatgtgc
tttaaccagcaaggggatcttctactagtaggacatggtgatggtcatatgacaatttgg
gacgtacaaaaagctacagcagcaaaagtcatatatggtgagcatatggcaccagtagtg
catgtttgttttatccgccaatctaaggccatcactggggattcaaaaggggtagttcta
ttgcacacattttccattatcccagtaattaaccgtttgactgtaaagggaacccagcga
ctttttgatggaaatactggaattgttctctcagcctgtcctcttctagtggatgaatca
tttggttttagcaactcatcttcccaggcaaaccaaacaacttcctccagtggtagtggt
cttggcagcatgatgggtggtgttgttggaggtgtagttggagtagattctggatggaag
tttttcaacgaaagctcctctacagtggaggatggtgttgtggtcatgtttattatgcat
catcatgctcttgtggttagactccgcaccaatatcgaccatgttgaccatattgagacc
ttctctagaccagatggagcacgagagggctccatcgcgtatgctgcatggaagtacaca
tcatccttcagtgattcatcatcattagatgaagaacgagtatcatggcttgcacttgca
tgggaccgtcaagtgcaagtggcaaagtttgttaaatcaaagatagttaaacacaaggaa
tggaagcttgatagtgcatctattggtgttgcctggttagatgaccagatgttagttgtc
cttaatttgagaggacagctctgtttgttctctaaagatggcagtgagcttcgcagaact
acctttgttccggatggccttctttttgatgacactatattgcaccatgcacatttttct
aacaagtttggtaacccagagaggcattttaacagttcagtagcagtaagaggtgctaca
gtgtatattcttggcccaacctttctcacagtttcacgacttcttccatggaaagaacga
attgaagcactaaagagagctggagattggatgggtgcactggacatggcaatgaggctt
tatgatggccagacacagggtgttgttgatctcccgagaacagttgattcaattagagaa
gccataatgccttacttagtagagttgcttctatcatatataagctatgtctttgaatat
atctcgattgcattgtcaagtcatactggaaaagggggagagacagatgttctaattgag
gctgatagatccctgctgacacaaagagaggaacaatatgctcgtgtaggaggggttgca
gttgagtattgtgtccacattgggcgtaacgacatcctttttgatacagtcttctctaag
tttgttgctgcacaaagtggaggcatgtttctggaggtactagagccctatatattgaag
gatatgcttggttctctcccccctgagattatgcaatcactagtggagcactatagcggc
aaaggatggttgcaacgagttgaacaatgcattctacacatggatatttcttcattggat
tttaatcaggtagtcagactgtgtcgtgaacacgggctatatggtgcactaatttattta
tttaaccaaggtctgaatgatttccgtacacctctagaggaacttttaacagtcattcag
aatagcaacagaaaagatgctgcttctactggatacaggatgcttgtttatctgaaatat
tgctttcagggtctggcatttcccccagggcatgggataattccccgatcccgccttcat
tcagtgagggaagaacttctgcaatttctgcttgaagaatctaagtcacttacttctgaa
gtatttaagagttttagtgcttcttgtgggaagtgcccaaacatatgctatcttctatgg
atggatactgaagctaccttggaagttctcaaatgtgcttttgcacaggacagttttgaa
cctagagatgaactttctggtactgtcaatgcaccttcctcagaggatgaagatggcatt
attgctggaaacccagggagtcaaaataatatggtacaaaatgtattggatgctatcatt
gacattgttggtttggaaaatgagatgattcagtccgttgttatgggtacagctgactca
gaattttggccttcagagaaggaatttggctatttaatcgagtttgtgtccttttttgtt
tcccacaaaagggctattgcatctaaaagagttgttatgcacattctcacttatctcact
tcgtcttatgatgacacaagagcaaggactcagaaggaaaaagaagttcttcaactcttc
aatgcagtcccccgaaatgactggaattctgattttgtcttgaacctctgttcagatgct
catttccatcaggcctgtggcttgatatttacgactaggaatcagaatttagctgctcta
gatagttacatgaaggataaagaggaaccattccatgcttttatcttcattgataaaagg
ttattcaaattagctgatgatgaagctttgtcatttcgtaccacggtaatatctcgtttt
cctgagttagtcaagctaagcagggaatatgcatttgtcttagtctttgatcatttctgt
gataaggtccagcaaatattagcagagcttcggtctgatcgacacagcctctttcttttc
ttgaaaactgctattgaagtgcacttgtcaggaaaactcgacttcagtgagcttagtgta
agaaacaatcaaactgttgaacttcagtactcttccactgaccttgaagattatcagcag
aggttatcaaatgtcaagttagaccacaatcctgtttctattgacgacgagttagttgaa
ctatatctggagcttttgtgtcagtatgagagaaggtcggttctgaagtttctggagact
tttgacagttacagattagaacggtgcttgcatctttgcctagattacggagttacagat
gctgctgcatttttgcaagagagggttggtgatgttgggagtgcccttgcacttatcctg
gctggacttgatgagaaaatcagtgtattcatctcttctgtggaaaatacttcctctggt
gttgcatcaaaaagtacctctgagactaagcaaccagacattgctctagaaatgaatgag
gctcatccagtgcttgatgcattacatgcctccattgggttgtgccaaagaaattcacaa
cgcttggacccagaggaatctcagtctctttggttccaactgcttgactccttttcagag
ccattgaaaaaattgtatggaagcaacgatgtaaatgagaaaagtgccaggtccaagggg
agtgaagcaccaagtgaacatctaaagggaaaagcactaccacaacgaatgaggatttca
gctaaacaaaggtgcctaaatgttctgcggaaaatattttcacaatttgttggagaaata
atagaggcaatggctgggtatatacccctaccagcaatcatggcaaaacttttatccgat
aatgggaatcaagagtttggtgatttcaaacttgtgatacacagaatgttatctatgtat
ctttacgaaaaaagaatactggaaacagctaagtcagtaattgaggatgactcattttat
accttgagcttattgaagagaggagtttgccatggatttgctccacagacttttgtgtgc
tgcatatgcaactgctcactttctaaagaaggtgctatttcagccatacggttgttcagt
tgtgggcatgcaacacatcttcagtgtgagtctgagcagagcaggtcatccagtcgggaa
tctaaagatggatgccctgtctgtctctcaacgagtaatacacaagcccaaaatagatcg
cctatggttgataatgggctagtcaagttttctggcgctgaacatgaagtgtcacatggc
atccatcagactcatgaagtcgatcatgctgagagatctcgtgggcttcaacatatgtca
cggtatgaaatactgagtaatcttcagaaagggcagaagtcctttcatatagaaactgta
cctccattgaaacttgcaccaccagctatatatcatgaaaagatacagaagagcaccact
tcggtgggggaacctagtaaacatttagttagaagtcaaaaaccccggaaaatatggcaa
atgaaggagcaaaagtcaagcgtattccgttaa
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integrated database retrieval system
