Panicum virgatum (switchgrass): 120707362
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Entry
120707362 CDS
T07260
Name
(RefSeq) ABC transporter G family member 36
KO
K08711
ATP-binding cassette, subfamily G (WHITE), member 2, PDR
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120707362
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120707362
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCG (White) subfamily
ABCG2, 3 subgroups
120707362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC2_membrane
ABC_tran
PDR_assoc
ABC2_membrane_7
AAA_21
AAA_29
AAA_16
ABC_trans_N
AAA_25
AAA
AAA_22
Rad17
AAA_30
AAA_18
RsgA_GTPase
AAA_33
AAA_28
AAA_23
nSTAND3
NACHT
NTPase_1
cobW
AAA_5
RuvB_N
Zeta_toxin
T2SSE
AAA_11
ABC2_membrane_3
SLFN-g3_helicase
AAA_19
ABC_ATPase
DO-GTPase1
Motif
Other DBs
NCBI-GeneID:
120707362
NCBI-ProteinID:
XP_039848190
LinkDB
All DBs
Position
5K:complement(38738360..38745912)
Genome browser
AA seq
1452 aa
AA seq
DB search
MDAAGDIQKVVSMRRGNSGSMWRRGDDVFSRSSREEDDEEALRWAALEKLPTYDRVRRAI
VPLGDGAEAGGGKGLVDVDVLSLGPQQRRALLERLVRVADEDNERFLLKLKDRVDRVGID
MPTIEVRFQNLEAAAEVRVGSSGLPTVLNSIVNTVEEAANALHLLPSRKRTMPILHDVSG
IIKPRRMTLLLGPPGSGKTTLLLALAGRLDKDLKVSGKVTYNGHEMTEFVPERTAAYISQ
HDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMGGK
EASVITDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPAKALFMDEISTG
LDSSTTFQIVNSLRQSIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREEVI
EFFESMGFRCPERKGVADFLQEVTSKKDQKQYWARRDEPYRFVTVKEFAMAFKSFHTGRA
IENELAVPFDKSKSHPAALTTTRYGVSGKELLKANIDREILLMKRNSFVYMFRTFQLMLM
SIIAMTLFFRTKMKHDTVNDGGLYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLL
FFPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDPNVGRLFKQYLLLLAVNQMAAAL
FRFIGGVARNMIVANVFASFMLLVVMVLGGFILVREKIKKWWIWGYWISPMMYAQNAISV
NEMLGHSWDKILNSTASNDTLGVQTLKSRGVFPEAKWYWIGFGAMIGFTILFNALFTLAL
TYLKPYGNSRTSVSEEELKEKHANIKGEVLDGNHLASASSHRPKGINNEADPAIVEDDSA
LTKRGMILPFVPLSLTFDDIRYSVDMPQEMKAQGVQEDRLELLKGVSGSFRPGVLTALMG
VSGAGKTTLMDVLAGRKTGGYIEGDISISGYLKKQETFARVSGYCEQNDIHSPQVTVYES
LLFSAWLRLPKDVDSNKRKIFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVE
LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM
KRGGEEIYAGPLGHHSSELIKYFEGIQGVSKIKDGYNPATWMLEVTTVSQEHILGVDFSE
IYKKSELFQRNKALIKELSQPAPGSSDLHFPSKYAQSSITQCMACLWKQNLSYWRNPPYN
TVRFFFTTIIALLLGTIFWDLGGKVKTSQDLLNAMGSMYSAVLFIGVMNCTSVQPVVAVE
RTVFYRERAAGMYSAFPYAFGQVVIELPYALAQDILYGVIVYSMIGFEWTAAKFFWYLFF
GYFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFIIPRPKVPIWWRWYCWIC
PVAWTLYGLVVSQFGDMMSRMDDGRTVKVFVEDYFDFKHSWLGWVAAVVVGFAVLFAALF
GFAIMKLNFQKR
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggcgggggacatccagaaggtggtgagcatgcggcgggggaacagcggctcc
atgtggcggcgcggggacgacgtgttctcgcgctcgtccagggaggaggacgacgaggag
gcgctgcggtgggccgcgctcgagaagctgcccacctacgaccgcgtccgccgcgccatc
gtcccgctcggcgacggcgccgaggcgggcggcgggaaggggctcgtcgatgtcgacgtg
ctcagcctcggcccgcagcagcgccgcgcgctgctggagcgcctcgtgcgcgtcgccgac
gaggacaacgagcgcttcctgctcaagctcaaggaccgcgtcgacagggtcgggatcgac
atgcccacgatcgaggtgcggttccagaacctcgaggcggcggcggaggtgcgcgtcggc
agcagcggcctccccaccgtcctcaactccatcgtcaacacggtcgaggaagcggcgaac
gcgctgcacttgctgcccagcaggaagcggaccatgcccatcctccacgacgtcagcgga
atcatcaagcctcgcaggatgacccttctgttaggcccacccggatcagggaagaccact
ttgctgctcgcgttggctggaaggcttgacaaagacctcaaggttagtggcaaagtgacc
tacaatgggcacgagatgacagagtttgttccagagaggacggccgcgtacatcagccag
catgaccttcacatcggagagatgactgtgagggagactcttgcattctcagcacgttgc
cagggtgttggctcccgctttgatatgctgactgagctgtcgaggcgggagaaggcggcc
aatatcaaacctgacgctgatattgatgcattcatgaaggcatccgcaatgggtgggaaa
gaggccagtgtgatcactgactatatcctgaagatattaggactagagatatgcgcagac
acgatggtaggggatgaaatgctcaggggaatatctggtgggcaacgaaagcgtgtgaca
accggtgagatgctggttggtccagccaaagcactttttatggacgagatctcgactggg
cttgatagctccactaccttccagattgtgaactcactcaggcagtccatccacatcctc
ggtggcacagcggtcatctccttgcttcaaccagcacctgagacatataatctgttcgat
gacattattctcctctcagacggccaggttgtgtaccagggccctcgagaagaagttatc
gagttttttgagtccatgggtttcagatgccctgagaggaagggtgttgctgacttcttg
caagaagtgacttcgaaaaaagatcagaaacagtactgggcacggcgtgatgagccctac
aggtttgtgacggtgaaggaattcgcaatggcattcaagtcattccacacagggagagct
atagaaaatgagcttgctgtcccattcgacaagagcaaaagccacccagccgcactaacc
accacgagatatggcgtgagtggcaaggagctgctgaaggcaaacatagaccgtgagatc
cttctcatgaagaggaactctttcgtctacatgttcagaaccttccagctgatgctgatg
tcaatcattgcaatgactctcttcttccgtacgaagatgaagcatgacacagtgaacgat
gggggcctctacatgggcgcactcttctttggcgtgcttatgatcatgttcaatggcttc
tctgagctggcactcactgtgttcaagctgcctgtattcttcaagcagagggatctcctt
ttctttccagcatggtcctacactataccctcatggatcctcaagatacccatcacattt
attgaggtcggaggttatgtattcttgacatactatgttattggcttcgacccaaatgtt
gggaggttattcaagcagtatctgcttctgttagcagtcaatcagatggcagcggcactc
tttcgctttataggtggggtagcaaggaacatgattgttgctaatgtctttgcatcattc
atgttgctggttgtcatggtgttgggaggatttattctagtaagagaaaaaataaagaaa
tggtggatctggggttactggatctccccaatgatgtatgcgcagaatgccatttcggtg
aatgagatgttggggcacagctgggacaaaatattgaatagcactgcctccaacgacacc
ctaggtgtgcaaacccttaagtcccgtggagtattcccagaagcaaagtggtactggatt
ggctttggtgcaatgattgggttcaccatactcttcaatgctctcttcactcttgccctt
acatacctcaaaccatatggcaactctcggacatcagtatctgaagaggagctgaaggag
aagcatgccaacataaaaggcgaggttctggatggaaatcacctggcatcagcaagcagt
catcgaccaaaaggaatcaacaatgaagctgatccagcaatcgtggaagatgattctgcc
ctgactaaacggggaatgatactcccatttgtcccgctctcactcacctttgatgacatc
agatactctgttgacatgccacaggaaatgaaagcacaaggtgtacaagaagatcgtctg
gagctcctcaaaggtgtcagtgggtcttttaggcctggtgtgctgaccgcactaatgggc
gttagtggcgccggaaaaactactttgatggatgtgttggccggaagaaagacaggtgga
tacattgaaggagacattagcatttcaggatacctgaagaaacaagagaccttcgcacgc
gtatcaggatactgtgaacaaaatgatatccactcgccgcaggtgacagtctatgagtca
ctgcttttctcagcgtggctccggcttcccaaggatgttgattcaaacaaaagaaagatc
ttcattgaagaggtgatggagcttgtggagctcaaaccactgagggatgctttggttgga
ctccctggagtgaatggtctgtcaactgagcagaggaaaaggcttaccattgctgtggaa
cttgttgcaaatccgtcaatcatcttcatggatgagccaacctccgggcttgatgcccgg
gcagctgcaattgtgatgcggacagtgaggaacactgtcgatactggtaggactgtggtc
tgcacgatacatcagcctagcattgacatatttgaagcattcgatgagcttttcctgatg
aagcgtggtggagaagagatctatgctggtccacttggccatcattcttcagagcttatc
aagtatttcgagggaattcaaggggtcagcaaaattaaagatggctacaatccggcaaca
tggatgctggaagtgactactgtctctcaggaacatattctaggtgttgatttcagtgag
atatacaagaaatctgaactcttccagaggaacaaggccttgataaaggaactaagccaa
ccagcgccaggttcaagtgacctgcatttccctagcaagtacgcgcagtcttccatcaca
caatgcatggcttgcctgtggaagcagaacttgtcatactggaggaaccccccttacaat
accgttaggttctttttcactaccatcattgctctcctcctcggcaccatcttttgggac
cttggcggcaaagtgaaaacatcacaagacttgttaaacgccatgggatcaatgtactct
gcggtgctgttcattggtgtcatgaactgtacctcagttcagccagtggtggctgtggag
cggactgtcttttaccgtgaaagagctgcgggcatgtactcagctttcccatatgcattc
ggacaggttgtgatcgagctcccatacgcactggctcaggatatcctatacggtgtcata
gtgtactctatgatcggcttcgagtggactgctgccaagttcttctggtaccttttcttt
gggtacttcacactgctctacttcacattctacggcatgatggctgttggcctgacacca
aactaccatatcgcctcgatcgtgtcctctgcgttctatgccatctggaacctcttttct
gggttcatcatcccacgaccgaaagtgccgatttggtggaggtggtactgctggatatgc
cccgtggcgtggacactgtatggactggttgtgtcacagttcggtgacatgatgtcacgg
atggacgatggcaggactgtgaaggtgttcgtcgaggactacttcgacttcaagcacagc
tggctggggtgggtggccgctgtggtcgtggggttcgcagttctctttgctgcgctgttc
ggtttcgctatcatgaagctcaacttccagaagagatga
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integrated database retrieval system
