KEGG   Panicum virgatum (switchgrass): 120707399
Entry
120707399         CDS       T07260                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120707399
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120707399
   03041 Spliceosome [BR:pvir03041]
    120707399
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120707399
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120707399
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120707399
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 120707399
NCBI-ProteinID: XP_039848223
LinkDB
Position
5K:complement(39131587..39135308)
AA seq 448 aa
MDPFSKKRKAEENGAATASPAGGAAALGLTRDDVLRLLEPLSRDQLADIAAAAALVSAHA
LDAVRAAADRDPALRKLFVRGLGWETTSDSLRAIFSAYGDLEEAVVITDKNTGRSKGYGF
VTFRHADSAVLALKEPSKKIDGRMTVTQLAAAGAAGGPSGGAAGSGGAPVADVSLRKIFV
GNVPADMSSERLLAHFASYGEIEEGPLGFDKQTGKFRGFALFVYKTPEGAQASLVDSVKV
IDNHQLVCKLAIEGKKGKQGQSQQSGAANQQQQQMMQGGPQEMQGGLGLGPGPQMGAQYG
GPGSGLSSFGAFGGVGGGFGGPNPYGNMPSSMGGGGAGGLGSMGGQVPTGLGGAGAGAFG
PGGMGGGSFGGSSQFGAGGMGAYGGLGMGGGSMYRMQQGGGGLPAGAFEGGNYPLPGSGF
RGQDPQGGMSPGPGGRAPPMYPNVPPYF
NT seq 1347 nt   +upstreamnt  +downstreamnt
atggatcccttctccaaaaagcgcaaggccgaggagaacggcgccgccaccgcctccccc
gccggcggggccgccgcgctgggcctcacccgcgacgacgtcctccgcctcctcgagccg
ctctcccgggaccagctcgccgacatcgcggccgcggccgccctcgtctcggcgcacgcg
ctcgacgccgtgcgcgccgccgccgaccgggacccggccctccgcaagctattcgtgcgg
gggctcgggtgggagaccacctccgactcgctccgcgccatattctccgcctacggcgac
ctcgaggaggccgtggtcatcaccgacaagaatactgggcggtccaagggctacggcttc
gtcacgttccgccacgccgactccgccgtcctcgcgctcaaggagccctccaagaagatc
gacggccgcatgaccgtcacgcagcttgctgccgccggcgcggccggagggccttccggt
ggggccgcgggcagcggtggtgctcctgtggcggatgtctcccttcgaaaaatctttgtc
ggcaacgtccctgccgacatgtcgtccgagcgcctccttgcgcacttcgcttcttatggc
gagatcgaggaggggccgctgggttttgataagcagacgggcaagttccgtggctttgcc
ctctttgtgtacaagacgcctgagggtgcgcaggcctcgttagtggactcggttaaggta
attgataaccaccagcttgtatgcaagctcgcaatagaggggaagaaggggaagcagggg
caatcacaacaatctggggctgccaaccagcagcagcagcagatgatgcagggtggtcca
caggaaatgcagggagggcttgggcttgggcctgggccacagatgggagcgcagtatggt
ggccctgggagtggtctgtcttcattcggtgcatttggtggtgttggcggcgggtttggg
ggtccaaacccttatggaaacatgccatcttccatgggtggagggggtgctggtggttta
ggctcaatgggaggccaggtgcctaccggtttgggtggtgctggggctggcgcatttggg
cctggtggaatgggtggtggctcgtttggtggatcatctcagtttggtgctggtgggatg
ggggcttatggtggccttggaatgggtggaggttccatgtaccgcatgcaacagggtgga
ggtgggctgcctgcaggtgcctttgaaggagggaactacccccttccagggtcgggtttc
cgtggccaggaccctcaaggtgggatgtcacctgggccaggtggcagggctcctcctatg
tatcccaatgtgccgccttatttctaa

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