Panicum virgatum (switchgrass): 120707401
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Entry
120707401 CDS
T07260
Name
(RefSeq) ubiquitin-like modifier-activating enzyme atg7 isoform X1
KO
K08337
ubiquitin-like modifier-activating enzyme ATG7
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120707401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120707401
04121 Ubiquitin system [BR:
pvir04121
]
120707401
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120707401
Membrane trafficking [BR:
pvir04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
120707401
Atg8 conjugation proteins
120707401
Ubiquitin system [BR:
pvir04121
]
Ubiquitin-activating enzymes (E1)
UBL-activating enzymes
120707401
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
120707401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG7_N
ThiF
Shikimate_DH
Pyr_redox_2
Pyr_redox
2-Hacid_dh_C
ELFV_dehydrog
Motif
Other DBs
NCBI-GeneID:
120707401
NCBI-ProteinID:
XP_039848229
LinkDB
All DBs
Position
5K:complement(39151551..39158518)
Genome browser
AA seq
1019 aa
AA seq
DB search
MAGAGAAGFPRLLQVQALQCLADEGFWDALRRLKLDVLGTDDSPIPITGYYTPRQFRPMA
SFFNLRSGSLNNSPGDRNGCQVPGTLINTNNTRGFQDLDRELLLKAEAKKILHDIMSGNV
EENPALLLRFLVTSFADLKNWKVYYNVAFPSLVFNSRMTLLSLHCASEVLSKEEAACLYE
ALQEWRASSETTAVVPFFLVGISSDSSASVRPLKDWKTCQGNYQKLLFGFYDHGCLSDCP
GWAIRNYITFLTIRWKIEKVQFFCYREYRGNPDLEQSLIGEASFPSPRGWDDPDHVPDAI
GWEGLKPGKGTKEMKPKEIDLQSMSPASQDEEKQLMHLKLMGWRHFPVNIDKLSGVRVLV
LGAGTLGCEVARLLMTWGVRKLTVVDSGNVATSDLVKQSLYIDKDCGVPRVTAIVPHLKA
RCPAVEVEGIQMEIPVPGHPDSPSKMASVLDDCKQLQTLVAANDAVFLLTDTWESRWLPT
LLCASENKIAITAVLGCDSYLVMRHGAGPGISGVTDELTAQIEKMSTEDALGNQRLGCCF
CNDAVSLFNPIPNGTLPGLTSVASGKAVELFARMLHHPDEIHAPGDIAGMETEHQLGLLP
HQLRGSLPKCVLSLELGNSSGNCTACSIAVLSEYRRRGLDFVMQAINYPTYLKDLTGISD
SKRADTCPKMLGSISVNSDKISDVRCLILGAGTLGCDVARILMDCGVRKLTVVDSGRVVV
SNLARQSLYTSDDCGAPKATAIVKHLVERCPSVDAQGIQMEIPMPGHPLSPGEAAGVLQD
CKSLEELVASHDAIFLLTDTRESRWLPTLLCTNENKIAITAALGYDSYLVMRHGAGPGTS
CEASNVTAATDKMSTMDPLGRQRLGCYFCNDVVAPVDSVSNRTLDQQCTVTRPGLASIAS
GCAADLFTRMLHHPDGIHAPGDIAGASSGHPLGLLPHQMRGSLSQYNLLTLLGYSSSNCT
ACSNVVLSEYRRRGMDFVMQVINEPTYLEDLTGLTDLMKSAACSQVEWVETDEDDFVEI
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtgccggtgcggcggggttcccgcggctactgcaggttcaggccctccagtgc
ttagcggatgaggggttctgggacgcgctccgccgcctcaagctcgacgtcctgggcacc
gacgactcccccatcccaatcaccggttactatactccacgccagtttcgcccgatggcg
agcttcttcaacctacgttcaggatcattgaacaattcgcctggtgataggaatggttgt
caagttccagggaccctgataaacactaataacacgaggggattccaagacctagatagg
gaacttcttctgaaagcggaagcaaagaagatcttgcatgacattatgtctggtaatgta
gaagagaatcctgctctgctacttaggttccttgtgacatcatttgctgatctgaagaat
tggaaggtctattacaatgttgcattcccctcgttggttttcaactctagaatgaccctg
ctaagtctgcactgcgcctcagaagtgctcagcaaagaagaggcagcatgcttgtacgaa
gcattgcaagagtggcgtgcttctagtgaaacaacagcagttgtaccattctttctggtt
ggtatatcctcggattcctctgcctctgtaagaccacttaaggactggaaaacttgccag
gggaactatcaaaagctgctgtttggattttatgatcatggatgtctctcagattgccct
ggctgggctattagaaattatattacattcctgactatccggtggaagattgagaaggtt
cagttcttctgctaccgtgaatatcgaggaaaccctgatctagaacaatccctcattggc
gaagcatcatttccatcacctcgtgggtgggatgatcctgatcatgtacctgatgctatt
ggttgggaaggattaaagccaggaaagggaacaaaagaaatgaagccaaaagaaatagat
cttcaatcaatgagtccagcaagtcaggatgaagaaaaacaactgatgcacttaaagctt
atggggtggcgccactttcctgtgaatatagacaagttatctggggttcgagttcttgtc
ttgggtgctggaactcttggatgtgaagttgctcgcctgcttatgacctggggtgtacgg
aaattaactgtggtcgacagtggtaatgttgccacgtctgaccttgtcaagcaatcactc
tacatagataaggactgtggagttccaagagtaactgcaatagttccacatctaaaagca
agatgtcctgcagtggaggttgaaggcatccaaatggagataccggtgcctgggcatcct
gattctcccagcaaaatggcaagtgtgcttgatgactgcaagcaactgcagacattagtg
gctgccaatgacgcagttttcttgttaactgacacatgggagagcaggtggcttccaact
cttctctgtgcaagcgaaaataagattgctattactgcagtattaggatgtgacagttac
cttgtcatgcgacatggtgctggtccaggaataagtggggttacagatgaattgactgct
cagatagaaaaaatgtctacagaagacgctcttggcaatcagagattgggctgttgtttc
tgcaatgatgctgtttccctttttaatccaattcctaatggaacactacctggacttacc
tcagttgcatctggcaaagcagtggagctctttgctaggatgttacatcatcctgatgag
atacatgctccaggtgatattgctggtatggaaacagaacatcagcttggtctgttacca
catcagctacgaggatcactcccaaagtgtgttttatctttggaactaggcaattcctcc
ggcaactgtactgcatgttcaattgcagtattgtcagagtacagaagaagaggattggat
tttgtcatgcaagctattaactatccgacatatctgaaagatcttacaggcatttctgat
tcgaagagggcagatacttgtcctaagatgctgggcagcatctctgtaaattcagacaag
atttctgatgtccgatgtctaattttgggtgctggaactcttggatgtgatgttgctcgc
attcttatggactgtggtgtgcggaagctaacagtggttgatagtggtcgtgtagttgtg
tcaaatttggcaagacaatcactctacacttctgatgactgcggtgccccaaaagcaact
gcaatagttaagcatctagtggagaggtgtccttcggtggatgcacaaggcattcagatg
gaaatacctatgccagggcatcctttgtctcctggtgaagcagctggcgtgcttcaagat
tgcaagagccttgaggaattagtagcttcccacgatgctatcttcttgttgactgacaca
agggaaagtaggtggcttccaactctcctctgcactaatgaaaacaagattgctattact
gcggcattagggtatgatagttaccttgtcatgcgacatggggctggtcctggcacgagc
tgtgaagcttcaaatgtgactgctgccacggataagatgtccacaatggatccccttgga
cgtcaaagactggggtgttatttctgcaatgacgttgttgctcctgttgattctgtctcc
aatcgaacactggatcaacaatgtacagtgacacgacctgggctggcctctattgcatct
ggatgtgctgcagacctcttcacaagaatgttacatcatcctgatgggatacatgctcca
ggagatattgctggtgcaagcagtggccatccacttggtctattacctcaccagatgcgt
ggatcactctcacagtacaacttattaaccctcttgggctattcctcgagcaattgcaca
gcatgttccaatgtggtattgtctgaatatcggaggagaggaatggattttgtgatgcaa
gtgatcaacgaaccaacgtatttggaagacctcaccggccttacggacttgatgaaatcc
gcagcttgctcccaggtcgagtgggtagaaactgatgaagacgattttgttgagatctga
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