Panicum virgatum (switchgrass): 120707440
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Entry
120707440 CDS
T07260
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1-like
KO
K14948
polypyrimidine tract-binding protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120707440
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120707440
SSDB
Ortholog
Paralog
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Motif
Pfam:
RRM_1
RRM_5
RRM_8
RRM_10
Motif
Other DBs
NCBI-GeneID:
120707440
NCBI-ProteinID:
XP_039848280
LinkDB
All DBs
Position
5K:complement(39599560..39604703)
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AA seq
558 aa
AA seq
DB search
MASGGQPQFRYTQPPSKVLHLRNLPWDCTPEELVELGTPFGKVVNTKCGVGANRNQAFIE
FADQNQAIAMISYYASSAEPAQVRGKNVYLQYSNRQEIVNTKTTGEGSGNVLLVGMEGVA
PDSVSIDVLHMVFSAFGFVHKIATFEKASGYQALIQFSDAETATSAKAALDGRCIPSYLL
PEPDGACTLRISYSAHSVLNVKYQSHRSRDFTNPYLPFLDSAKDGSGADGKKQEPESNIL
LASIENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNGFQALIQYPDIQTAVAAKEALEGHS
IYEGGYCKLHLAFSRHTELNVKVNNERGRDYTKGNVTPSSNQPSILGPQPVPSVGAAIAQ
PNNSVPSAATSAVMPPGVPSPAMPGEPSVTLPSHPSSEPHLQTPVAPLGGPPQYPSQAIL
PGPPQQFPGYGSAQAPMLQPSGQGSQQMSNHVNYQLPPGSAQFMQYLGNGSHMVPNTHGP
QAVAFPGLGGQQLSPGAQMMQAPGYGGLPFSQGPRQPMAQFPMYSNQQFPPGMEPQMMPF
SEQGGRQLPFAPQGPYGR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcttccggtgggcagccgcagttccggtacacgcagccgccgtcgaaggtgctccac
ctgcggaacctgccgtgggactgcaccccggaggagttggtcgagcttgggacccccttc
ggcaaggtcgtcaacaccaaatgcggcgtcggcgccaaccgcaaccaggcattcatcgaa
ttcgctgaccaaaatcaagcgattgccatgatatcatattatgcgtcgtcagcagagcca
gcgcaggtaagagggaaaaatgtgtatcttcagtactccaatagacaggagattgtcaac
accaagactactggggaaggttcaggcaacgttttgcttgtggggatggagggtgtcgcg
ccagattctgtcagcatcgatgttctacacatggtattttctgcttttggatttgttcac
aagattgctacctttgagaaggcatctggttatcaggcgttaattcagttttctgatgct
gaaaccgcaacatccgcaaaagctgcactggatggtagatgtattcctagctatttgcta
ccagaaccggatggggcctgcactttgagaataagctattcagcacacagtgttctcaat
gtcaagtatcagagccaccggagtagggactttactaacccttaccttccttttctggat
tctgctaaagatggatctggagcggatgggaaaaagcaggaaccagagagcaatatactt
cttgcatccattgagaacatgcagtatgttgttacaatagacgtgcttcatgaggtcttt
tctgcttttggatttgtacaaaagatagcaatttttgaaaagaatggctttcaagcattg
atccagtatccagacattcaaaccgcagttgcagcaaaagaagcattagaagggcacagc
atctatgaaggcggatactgcaagcttcaccttgcattttcacgacatactgagcttaat
gttaaggttaacaatgaacgaggtagagattatacaaaggggaacgtcactccaagcagt
aatcaaccttccattcttggtcctcagccagtaccaagtgttggagccgccattgcacag
ccaaacaatagtgttccttcagcggccaccagtgcagtaatgccaccaggggtgcccagt
ccagcaatgcctggagaaccatcagttactctaccttcccatccttcgagtgagccgcac
ttgcaaactcctgttgctcccctgggtggacctccacagtaccctagccaggcaatcctc
ccaggcccccctcagcagttcccaggttatggctccgctcaagctccaatgctgcagcct
tcaggtcagggaagtcaacagatgtccaaccatgtaaactatcagctacctcctggttct
gcccagttcatgcagtatcttggcaatggaagccatatggttccaaacacacatggccca
caagcagtggcgttccctggcctcggcgggcagcagctatctccaggtgcccagatgatg
caagctccaggttatggaggtctgccattttcacaaggtccacggcaaccgatggcgcag
tttccaatgtacagcaaccagcagttccctccgggtatggagccccagatgatgcccttc
tctgagcagggaggtcgacagcttccatttgctccgcagggtccctatggtcgttag
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