Panicum virgatum (switchgrass): 120707474
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Entry
120707474 CDS
T07260
Name
(RefSeq) neutral ceramidase-like
KO
K12349
neutral ceramidase [EC:
3.5.1.23
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00600
Sphingolipid metabolism
pvir01100
Metabolic pathways
Module
pvir_M00099
Sphingosine biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
120707474
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.23 ceramidase
120707474
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Gene cluster
GFIT
Motif
Pfam:
Ceramidase_alk
Ceramidse_alk_C
GEVED
Motif
Other DBs
NCBI-GeneID:
120707474
NCBI-ProteinID:
XP_039848315
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Position
5K:complement(40074169..40078475)
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AA seq
780 aa
AA seq
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MMEPPSSSRCQLHGSGSAMIRRRCLFLLLLLLALQSCRSPALAASPYLVGMGSYDITGPA
ADVNMMGYASAEQIAAGIHFRLKARAFIVAEPGGKRAVFVNLDACMASQLVTVKVLERLK
ARYGDLYNENNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDVIVNGIEQTIVEAHN
NLRPGKIYVNKGDLLDAGVNRSPSAYLNNPAEERSKYPYNVDKEMTLIKFVDDELGPVGS
FNWFATHGTSMSRTNSLISGDNKGAAARFMEDWAEENVIPNQAAHASSGNPRRVSALISE
PNEMTDDLVRSASSYKASGGRQISGSNVTRRIRSTQQNKPNFVSAFCQSNCGDVSPNVLG
AFCIDTGLPCDFNHSTCNGKNELCYGRGPGYPDEFESTRIIGNRQFLKAVNLFNSASEEI
QGKVDYRHTYLDFSQLKVNVPTSTGGQQVVETCPAAMGFAFAAGTTDGPGAFDFKQGDAK
GNAFWRLVRDAIRPPGPEQVKCQAPKPILLDTGEMKVPYDWAPAILPIQIIRIGQLVILC
VPGEFTTMAGRRLRDAVKDVLTNSGQFDNNIHVVLAGLTNTYSQYITTYEEYQVQRYEGA
STLYGPHTLSAYIQEFQRLATAMVSNKEVPTNLQPPDLLNRQIELLPGVIVDKTPSGVTF
GDVSSDVPANSTFRKGSTVNATFYSACPRNDLLTDGTFALVEKLDGGSDWVPAYDDDDWS
LRFKWSRPSRLSPNSFATLEWTVPEDAPPGVYRLRHFGASKPLIGSIKYFTGTSSAFVVR
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgatggagccaccatcttcctcccgctgccagcttcacggctctggctctgccatgata
cggcggcgatgtctcttcctcctcctcctgctgcttgctcttcagagttgccgcagcccg
gcacttgcagcctcgccgtatctggtcggcatgggcagctacgacataacggggcccgca
gcagacgtcaacatgatggggtacgcgagcgccgagcagatcgcagcagggattcacttc
aggctcaaggcacgcgcgttcatcgtcgccgagcctggtggcaagcgtgccgtctttgtc
aaccttgatgcctgcatggcgtcgcagcttgtgactgtaaaggtgcttgagaggctaaaa
gcaaggtacggtgatctttataacgagaacaacgtggctatcagcggaatccacactcat
gccgggcctggaggttatctgcagtatgtggtttacattgtcacatctcttgggtttgtt
cgccaatcctttgacgtaatcgtcaacggcattgagcaaaccattgttgaagctcacaat
aatctccgtcctgggaaaatatatgtgaacaaaggtgacctccttgatgctggtgtgaat
cgcagccccagcgcatacctaaacaacccagctgaggaaagaagcaaatacccgtacaat
gttgataaggaaatgacccttatcaagtttgtagacgatgaacttggtccagttgggagt
ttcaattggttcgcaacccatggaacttcaatgagtcgtacaaattctttgatcagtggc
gataacaaaggtgcagctgcacgtttcatggaagattgggcggaagaaaatgtcatccca
aatcaggctgctcatgcaagctctggaaatccgagaagagtctctgcactaatttctgag
cccaatgagatgacggatgacttagtacgatcggcatcgtcctacaaggcctctggtgga
aggcaaatatcaggttcaaatgtcaccaggcgtattagaagcactcaacaaaataagcct
aattttgtttctgcattctgccagtcaaactgtggggatgttagtccgaatgtcttggga
gcattttgtatagatactggccttccttgcgacttcaatcacagtacatgtaatgggaag
aatgagctatgctatggacgaggcccaggatatcctgatgagtttgaaagtacccgtatc
attggcaataggcaatttctcaaggctgttaatcttttcaattcagcatctgaagaaata
cagggcaaagttgactacaggcatacttacctagatttctcgcaactaaaagtgaatgtt
cctacaagtacaggaggtcagcaggtagtggaaacatgcccagcggccatggggtttgcc
tttgcagctggaaccacagatggccctggagcttttgattttaaacaaggagacgccaag
ggaaacgctttctggaggttagtacgggatgcaattaggccaccggggccagagcaagtg
aagtgtcaggctccgaaaccaatacttctagacactggtgaaatgaaggttccatatgat
tgggcacctgcaattcttccaattcagatcataagaatcggccagctggttatcttgtgc
gtccctggagaattcacaacaatggctgggaggcggttacgtgatgcagtaaaagatgta
cttacaaatagtggtcaatttgataacaatattcatgttgtccttgcgggcctaacaaac
acatattcccaatatattacaacttatgaagaatatcaggtgcaaagatacgagggagca
tcaacgttgtacggcccccacaccttaagtgcctacattcaagagtttcagaggctcgct
acagctatggtctcaaacaaagaggtcccaacaaatttgcagccccctgatctgctgaac
aggcaaattgagctactcccaggtgttatagtcgacaagacgccttccggcgtcacgttt
ggagacgtcagttcggatgttcctgcaaactcaactttcaggaagggcagcaccgtgaac
gctacgttctattcggcctgcccaaggaatgacctcctcactgacggtaccttcgcacta
gttgagaagctggatggtggcagcgattgggtccctgcctatgacgacgacgattggtct
ctgcgcttcaagtggtcgaggccgtcacgactgagcccgaacagttttgcgactctggag
tggacagttcctgaagatgctccaccgggtgtttacaggttgaggcatttcggtgcatct
aagccgttgattgggtcgatcaaatattttacagggacctctagtgcattcgtagtgcgt
taa
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