Panicum virgatum (switchgrass): 120707480
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Entry
120707480 CDS
T07260
Name
(RefSeq) heat stress transcription factor C-1a-like
KO
K09419
heat shock transcription factor, other eukaryote
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120707480
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Heat shock factors
120707480
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HSF_DNA-bind
NUDE_C
PSME4_C
SpoVR_C
UPF0184
Motif
Other DBs
NCBI-GeneID:
120707480
NCBI-ProteinID:
XP_039848321
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Position
5K:40258411..40260591
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AA seq
318 aa
AA seq
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MDGLHTELALGLLGCGGGQLQTAPFVAKTYQMVCDPRTDALVRWGRDSNSFVVADPAGFS
RLLLPCFFKHSNFSSFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIARRKKRGEG
AASSCSAAGAAGEDRHQEQEGQLLDQEEREAVLEEVQRLRREQTAIGEELAQMSRRLQAT
ERRPDQLMSFLARLAEDTDGVTRHLVEQAAEKKRRRLQLSSHPISPIPPPLPPAAPPAHP
LLGLGGKDCDGWQWAEQKPPAIVLPSFDPAPSSCGVQQVPDFGGGGGGGGIIGMGLTTAD
DTAVETPFPFCLLGQGFF
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggacggcctccacacggagctcgcgctggggctgctcgggtgcggcggcggccagctc
cagacggcgccgttcgtggccaagacgtaccagatggtgtgcgacccgcggacggacgcg
ctcgtgcgctgggggagggacagcaacagcttcgtcgtcgccgaccccgccggcttctcg
cggctgctcctcccctgcttcttcaagcacagcaacttctccagcttcgtgcgccagctc
aacacatacgggttccggaaggtgcacccggaccggtgggagttcgcgcacgaatccttc
ctgcgcggccagacgcacctgctgccgcgcatcgcgcgccgcaagaagcgcggcgagggc
gccgcgtcgtcctgctccgccgcgggcgccgccggcgaggatcgccaccaggagcaggag
ggccagctgctggatcaggaggagcgggaggcggtgctcgaggaggtgcagcggctgcgg
cgggagcagacggccatcggagaggagctggcccagatgagccgccgcctgcaggccacg
gagcggcgccccgaccagctcatgtccttcctcgccaggctcgccgaggacaccgacggc
gtcacgcgccacctcgtcgagcaggccgccgagaagaagcgccgccgcctgcagctctcc
tcccaccccatttcccctatcccgcccccgctccctccggcggcgccgccagcccacccg
ctgctggggctcggaggcaaggactgcgacggctggcagtgggcggagcagaagccgccg
gcgatagtcctcccctccttcgatcccgccccgagctcctgcggggtgcagcaggtgccg
gatttcggaggcggcggcggcggcggcggcatcatcggcatgggcctgactaccgctgac
gacacggcagtggagacgcccttcccgttctgcctcctcggccagggtttcttttaa
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