Panicum virgatum (switchgrass): 120707617
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Entry
120707617 CDS
T07260
Name
(RefSeq) YTH domain-containing protein ECT2-like
KO
K20102
YTH domain-containing family protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120707617
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120707617
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-GeneID:
120707617
NCBI-ProteinID:
XP_039848480
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Position
5K:44001669..44008066
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AA seq
626 aa
AA seq
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MEPKGEPGQKPIEEAMDSLKIDASTKASNVNLPAKKDASSSDAVSCISSGDAASTVKESE
MNQEASTGDQGMYYYGYYYPGSYGGWDENGYFVGYNGLEMHPAVVQGDNGSYLCYLPGYE
NGYASYSPVVPGGVTSADGQYVSKEPYYPTAIPMPDPSTPGIFAQPIAYGPELVPAYSWD
PSFVLLDGVQGHPVGVHQTNYAARPKHSSNKHGVPSSKAARSAKAAPETIKGSSSALEPL
PNSANSNPLSKGANKASGASITKGYLPSSKFVTHNNNQGKSSVYQNKGINVKESGRSWTN
SDKLKTRSKLNGHGDSDISNENSHTDDSRHSLSPRGDAVGLSSTGDANNTIPSPVAISKN
AYNLPDFVTKYEQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAYRLAQERMAEK
GTKCPVFLFFSVNASGQFCGVAEMVGAVDFNRNMNFWQQDKWNGFFSVKWHIIKDVPNPQ
FRHIILENNENKPVTNSRDTQEVKFPQGTEMLNIFKNFSCKTSILDDFDFYENRQKVMQD
RRGKPLASSFDHPLAKAEISAEIKKQTQLISGTQLDRTKSNEGQGSTVGMAPDTTKKNEE
QSNNVAEVLDVVQSNKELPSKVATEG
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaagggcgagccgggccagaagcctatcgaagaagcaatggacagcttgaag
attgatgctagcacgaaggcaagcaatgtcaacttgcctgctaagaaagacgcaagttct
tctgatgcagtatcttgcatttcctcgggcgatgcagctagtactgtgaaggaaagcgaa
atgaaccaagaagcttctactggggaccaagggatgtattactacgggtattactatcct
ggctcatatggaggatgggatgaaaatggctactttgttggttataatggtctagagatg
cacccagcagttgttcaaggtgataacgggtcatatttgtgctatctcccagggtatgaa
aatggatatgcttcttatagtccggttgttcctggtggcgttactagtgcggatggtcaa
tatgtcagcaaagagccatattatcctactgcaattccaatgccagatcccagcacacct
ggcatttttgctcaaccaattgcttatggacctgaactagtccctgcatactcatgggac
ccttcttttgttcttctggatggggttcagggacatccagttggtgtgcatcaaacaaat
tatgctgcaagaccaaagcattcttctaataagcatggtgttccttcttccaaagctgcc
cgcagtgcaaaagctgctccagaaactatcaagggatcatcatcggctctagaaccttta
ccaaattctgctaatagcaacccattatcaaagggtgcaaataaggcatctggtgcttcc
ataacaaaaggatatcttccatctagcaagtttgtgacacataataataaccaaggaaaa
agcagtgtttatcaaaacaaaggcatcaatgtgaaagaaagtggtagaagctggaccaac
agtgacaagcttaagacaagaagtaagctaaatggacatggtgattctgacatatctaat
gagaatagccacactgatgactcaagacacagtttaagccctcgaggtgatgctgttgga
ttgtcaagtactggagatgctaacaataccataccttcacctgtcgcaataagcaaaaat
gcatataatcttccagattttgttacaaagtatgagcaagctctattctttgtaattaaa
tcttacagcgaagacgatattcacaagagtatcaagtacaatgtctgggcaagtactcct
aatggaaataaaagacttgacaatgcctatagacttgcacaggaaaggatggcagaaaaa
ggaactaaatgtcctgttttccttttcttctctgttaatgccagtggtcagttttgtggt
gtggctgagatggttggtgcagtagattttaacaggaacatgaacttctggcaacaggac
aagtggaatggtttcttttcagtaaaatggcacattatcaaggatgtgcctaatccacaa
tttcgccacataattttggagaataatgagaacaaacctgtgacaaatagcagggacaca
caagaggtcaaatttccacaaggtacagagatgttgaacattttcaagaacttctcatgt
aaaacatcaatattggacgactttgacttctacgaaaatcggcagaaagtaatgcaggac
agaaggggcaagccacttgcttcatcatttgatcacccattggcaaaagctgaaatatct
gcagaaattaaaaagcaaacacaattgataagtggcacacagcttgatagaactaagagt
aatgaggggcagggcagtactgttggtatggcacctgatacaaccaagaaaaatgaggag
cagagcaacaatgttgcagaagtacttgatgttgtccagagtaataaggagctacccagc
aaggttgcaacagaaggatga
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