Panicum virgatum (switchgrass): 120707622
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Entry
120707622 CDS
T07260
Name
(RefSeq) long chain acyl-CoA synthetase 4-like
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00061
Fatty acid biosynthesis
pvir00071
Fatty acid degradation
pvir01100
Metabolic pathways
pvir01212
Fatty acid metabolism
pvir04146
Peroxisome
Module
pvir_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
120707622
00071 Fatty acid degradation
120707622
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120707622
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pvir01004
]
120707622
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120707622
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
120707622
Lipid biosynthesis proteins [BR:
pvir01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
120707622
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of breast milk
120707622
Exosomal proteins of breast cancer cells
120707622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
120707622
NCBI-ProteinID:
XP_039848487
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All DBs
Position
5K:complement(44069224..44074730)
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AA seq
658 aa
AA seq
DB search
MQHLVQVEEGREAADGAPSAGPTYRCAAGGKGGATPAVPGLDCCWDIFRLSVEKCPDNKM
LGRREIVDGKAGNYTWLTYKEVYDTVIKVGAAIRSCGVGKGGRCGIYGANSPEWVISMQA
CNAHGIYCVPLYDTLGAGAVEFVLCHAEVQIAFVEENKIGEILKTFPNATKFLKTIVSFG
KVNPEHKEKVEENGLSIYSWEEFLQLGGEEKFELPPKEKDDICTIMYTSGTTGDPKGVLI
SNKSIITIVSAVDEFLSNSGEELREDDVYISYLPLAHIFDRVIEEVFIHHGASIGFWRGD
VKLLVEDIGELKPTVFCAVPRVLDRIYGGLQDKITTGGFLKKTLFNVAYKYKQGNMLKGS
KHEEAAAVFDKLVFTKVKRGLGGRVRLILSGAAPLSRHVEEYLRVVTCSHVLQGYGLTET
CAGSFVSLPNNMSMLGTVGPPLPYVEVRLESVPEMGYDALSSETPRGEICIRGDTLFSGY
YKREDLTKEIMVDGWFHTGDIGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLENIFGQT
PGVDSVWVYGNSFESSLVAVVNPNKQALERWAESNGVTGEFAAICEDPKAKEFILGELTK
MGKEKKLKGFELIRAVHLDPVPFDMDRDLITPTYKKKRPQLLKYYQSVIDGMYQSMKY
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcagcacctggtgcaggtggaggaggggagggaggcggcggacggggcgccctcggcg
gggccgacgtaccggtgcgccgcggggggcaagggcggcgcgacgcccgccgtgccgggg
ctcgactgctgctgggacatattccgtttgtccgtcgagaagtgccccgacaacaagatg
ctcggccgccgcgaaattgtcgacgggaaggctggcaactacacgtggctgacctacaag
gaggtttacgacaccgtgatcaaggtcggggctgcgatccggagctgtggcgtcggcaag
ggtggccggtgcggcatctatggggccaattcgcctgagtgggttatcagtatgcaggcc
tgcaatgcccatggcatctactgtgttccattgtatgacacgcttggtgctggggcagta
gaatttgtgttgtgccatgcagaggtacagattgcttttgttgaggaaaataagattgga
gagatactcaagacatttcccaatgcaaccaaatttttgaagacaattgtgagcttcggt
aaggtcaatcccgagcacaaggaaaaagttgaagagaatggcttatccatctactcttgg
gaagagtttctgcaactgggcggtgaagagaagtttgaactcccaccaaaggaaaaggat
gacatatgcacaataatgtatactagtggcacaactggtgatcctaagggagtattaatc
tccaacaagagcatcattaccattgtttcagcagtagatgagttccttagcaactcaggc
gaggagcttcgtgaggatgatgtttacatatcttaccttccgcttgctcatatctttgac
cgagtgattgaggaagtgttcattcaccatggtgcttcaattggattttggcgtggggat
gttaaactcttggttgaagacattggtgaactcaaaccaacagtattctgtgctgttcca
cgtgttctggacaggatttatggaggattgcaagataaaatcacaactggtggtttcttg
aagaagaccttgttcaatgttgcttacaaatacaaacaaggtaatatgttgaaaggaagc
aagcatgaagaggctgctgcagtgtttgacaaactggtcttcaccaaggtgaaacgggga
ctaggtggcagggttcggctgattctatccggtgctgctcccttgtctagacatgttgag
gagtatctgcgtgtggtgacatgctcccatgttctccagggatatggactcacagagacc
tgtgctgggtcctttgtttccctaccgaacaacatgtccatgctgggtaccgtcggccct
ccgctcccatacgtcgaagtacgcctggaatctgtccctgagatgggttacgacgcattg
tccagcgagacgcctcgtggggagatttgtataagaggggacaccctgttctcagggtac
tacaagcgagaggacctaaccaaggaaatcatggtcgatggttggttccatacaggagac
attggtgagtggcagcctgatgggagcatgaagatcatcgaccgcaagaagaacatcttt
aagctctcacagggagagtatgttgcggtcgagaatctggagaacatctttggtcagact
cccggtgttgattcggtttgggtgtatggcaacagcttcgaatcgagcctcgttgcagtg
gtgaaccccaataagcaggctctggagcgatgggcagagtcgaacggggtaactggagag
tttgctgcgatttgtgaagacccgaaagccaaagagttcatcttgggagaactaaccaag
atgggtaaagaaaagaagctcaaaggcttcgagctcatccgggctgttcatctggacccg
gtgccgttcgacatggatcgcgacctcattaccccgacgtacaagaagaagcggccgcag
ctgctgaaatactaccagagcgtcattgatggcatgtatcagagcatgaagtattag
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