Panicum virgatum (switchgrass): 120707706
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Entry
120707706 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120707706 isoform X1
KO
K06100
symplekin
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120707706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120707706
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120707706
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120707706
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120707706
U7-dependent histone pre-mRNA processing factors
120707706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
120707706
NCBI-ProteinID:
XP_039848607
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All DBs
Position
5K:complement(44844680..44863980)
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AA seq
1283 aa
AA seq
DB search
MEFGADGARWPPPPPPGDRGEVASPRFDSSRAIRLLRELGTNVTEDLVVLMPNLLSFLKH
DDPAVVKQSIASGTNLFAAVLEEMALQINKCGKLEAWLEDLWAWMKQFKDAVRGVMHEPG
PIATKLLAVKFIETWILCCTSQANSDQIQPTEGKNWRFDISRLSQFHPSLDPVVLEADAH
RALILLLDILQSAYAHRGSFLVGTINSLAAVVKNRPIYYDRVLPVLLDFNPGLETAKGAH
SASLRYALRAAFLGFLRSPHQAMVESKDILMRRLRALSPGEAMEQNIRQAEKMSRNIERA
SRAAKDESPAWEMPYGDNRNKPADRPSDVLAMSDGIAKRARFDTSATSNLPVLGSSDYSD
MQTDNDANVGHLSDPALLNSDVSPVEKMIEMIGALLAEGERGAESLGILVSTVEADVMAD
IVIETMKHLPGASFPLAKNNGVQKPDFKYSSGLLTENLAVNPDSSLFAAPSTSTADGVSI
SPSDPLFMPGVHDAKRDPRRDPRRLDPRRTVSPAAVNSLQVRVETNSMHQTDNLPNALCS
NSGKAENYSDYSRDLPKNEDEHHSASQPSQTIAKDKSELSDVTTEPEPTFEVEAPVDVGI
HSSDVDEEMLNPMSSEVTSIDESDSLDLEVDPFLPGPEASTPDDTNHDLAVITSHLELSD
KKKSLLNKLAIGRIIGDYKKDSLNARFSLLAHLIAQSADDDNIMDLIQRHIIFHYHDQKG
HELAMHVLYLLQSMNVANSPESSTSTSKHYEKFFLSLARSLIDSMPASDKSFSKLLCDAP
YLPESSFRLLEGLCMSEDNSQQIKDGDGDRVTQGLGTVWSLILGRPPLRHVCLDIALKCA
VHSQDEVRGKAVRLVAKRLYDLTYATEKIEQFATDSLVGVANEHDVDTDINLKPLKESTA
EFEVGSQETSVSGSQIPDAGCSESGSLKTSLISPKQSSVSLSEAKRHTSLFFALCTKRPN
LLQHLFNVYGRSPKVVKQCIHWHMPSLVSNLGSSCPEMLNIIHNPPEGSVHLITLILQTL
TDESTPSADLVAAVKQLYNTLKDASILIPLLPSFPKEEVLPIFPRLVDLPLEKFQDALAR
ILQGTAHTGPALTPAEVLIAIHDINPEKDKVALKKVTDACTACFEQRTVFTQQVLEKSLN
QLVDRIPIPLLFMRTVIQALDAFPALVDFVMGILSRLVNKQIWKMPKLWVGFLKLAFQTQ
PRSFDVLLQLPPPQLEYMLNKYPNLRTPLSSFVNQRNMHNTLPRQILKILGFFSEPQQAP
ISFVPATLQTADATSSLPGATLM
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggaattcggggcggacggcgcccggtggccgccgccgccaccgccgggagaccgcggg
gaggttgcctcaccccgcttcgattcgtcccgtgccatcagattactgagagagcttggc
acaaatgtaacagaagatttggttgtgctgatgccaaatttgctgtcatttttgaagcat
gatgatcctgcggttgttaagcaatctatagctagtgggacaaatttatttgctgctgta
ttggaagagatggcacttcagattaacaagtgcggaaaacttgaagcttggctcgaagac
ttgtgggcttggatgaagcagttcaaagatgcagtccgtggtgtgatgcatgagcctgga
cctattgcaactaaactactcgctgtaaagttcattgaaacatggattttgtgttgcaca
tctcaagccaacagtgaccaaatacagccaactgaagggaaaaactggagatttgatatt
tcacgattatctcaatttcatcctagccttgatcctgttgttctggaagctgatgcacac
agagctctcatcctcctcctggatattctgcaatcagcttatgctcatcgaggatccttc
ctagttggcaccattaattctcttgcggcagttgtaaagaatcggccaatttactatgac
cgtgtgctgccagtgctacttgatttcaaccctggcttggaaactgcaaaaggtgcacac
tcagcaagcctgcgttatgccctaagagcagcctttttggggtttctaaggagtcctcac
caggcaatggttgagtccaaagacatattgatgcggcggcttcgtgctctcagccctggc
gaggcaatggaacaaaatattaggcaggcagagaagatgtctaggaatattgagcgtgct
tctcgcgctgccaaggatgagtctccagcatgggagatgccttatggagataatcggaac
aaacctgctgatagaccaagtgatgttcttgctatgtctgatggcatagctaagagagca
agatttgacacatctgccacttctaacttgccagttctgggatcctctgattattctgat
atgcagactgacaatgatgccaatgtgggccatttatctgatccagctcttttgaacagt
gacgtgtctcctgttgagaagatgattgaaatgattggtgctttacttgctgaaggagaa
agaggagctgaatccctgggtattcttgtctcaacagtagaggcagatgtcatggcggac
attgtgatagaaacaatgaaacatctaccaggagcctcatttcctttagcaaaaaataat
ggtgtccagaaaccggattttaaatattcatctggtctcttaacagagaacctggcagtc
aatccagactcgtcactgttcgctgcaccatcaacatccacagctgatggagtcagcatc
tcaccatctgaccccctttttatgcctggtgttcatgatgctaagcgtgatccaagaagg
gaccctcgtcgcctcgatccacggcggacagtgtcacctgctgctgtaaattcgttacag
gtgagggtggaaactaatagcatgcatcagacagataatttgccaaatgcactttgctcc
aattctgggaaggctgaaaactattcagattattcaagagatttaccaaaaaatgaagat
gaacatcactcagcttctcaacccagtcaaacaattgccaaagacaagtcagagctttca
gatgttaccactgagccggagccaacctttgaagttgaggcaccagtggatgttgggatt
cattcttctgatgtcgatgaagagatgctgaatcccatgtcttcagaagttacttcaata
gatgaatctgatagtttggatttagaggttgatccctttttaccaggtcctgaggcatca
acaccagatgataccaatcacgacttggcagttattacatctcatttggaactaagtgat
aaaaagaaatccttattgaacaaacttgccattgggcggataattggtgattacaagaaa
gatagtctcaatgccagattttctttgcttgcacatttgattgcccagagtgctgatgat
gataatattatggatttgattcagaggcacattatctttcattatcatgatcagaagggg
catgaactggcaatgcatgtattgtatctgctacagagtatgaatgttgctaattcgcca
gaaagctctacctccacttctaaacattatgaaaagttctttctatcacttgcgaggtcc
ttgattgactcaatgcctgcttcagacaagtcatttagcaaacttttatgtgatgcgcca
tatctgcctgagtcttcatttagattactagagggtctttgcatgtcagaagacaacagc
caacaaataaaggacggggatggtgaccgtgtcacccaaggcctggggactgtatggagc
cttatcttgggccggcctccgcttcgccatgtttgcttggatattgctctgaagtgtgcc
gtccactctcaagatgaagtcaggggaaaggcagttagattggttgcaaaaaggctatat
gatctgacatacgcaacagaaaaaatcgagcagttcgccacagatagtcttgtaggagtt
gctaatgagcatgatgtggacacagatattaacttgaaacccttaaaagaatctacagct
gagtttgaggtaggcagtcaggaaacttcagttagcggttctcagattccagatgctggg
tgttctgaaagtgggtcactcaagacatcattgatttcaccgaaacaatcctcagtatca
ttatctgaggcaaaacgccatacgtctttgttctttgcactttgcacaaagaggcctaat
cttcttcagcatctgttcaatgtttatggaaggtctccaaaagttgtcaagcagtgtatc
cattggcatatgcccagccttgtaagtaatttggggtcctcatgtcctgagatgctgaac
ataattcataatccacctgaaggcagcgtacatcttattaccttgatactacaaacattg
actgacgagtcaactccttcagctgacctagttgctgctgttaaacaattatataatacc
ctgaaggatgcatccattcttattcctttgctgccttcatttccaaaggaagaggtattg
cccatatttccgaggctagttgatcttccgcttgagaaattccaagatgcgcttgctcgg
atattgcagggaactgctcataccggtccagcattgactcctgctgaagttctgattgca
attcatgatattaacccagagaaagataaagttgccttaaaaaaggtcacagatgcttgt
acagcatgctttgagcagcgtacggtatttactcagcaagtcttggagaagtcactgaat
caattggttgacaggataccaattcctcttctttttatgagaacagttattcaagcactt
gatgctttcccagctttggttgattttgtcatgggaatactctctaggcttgtcaataaa
cagatatggaaaatgccaaagctatgggttgggtttttaaaattggcattccagactcag
ccacgttctttcgatgtcttattacagctacctccaccacagcttgaatatatgttgaat
aagtatcccaatcttcgaacacctctttcttcctttgttaatcagcggaacatgcataac
accttgcccagacagattttgaaaattctgggcttctttagcgaacctcagcaggcacca
atatcgtttgtgcctgctacattacagacagcagatgcaacctcctcacttcctggtgca
accctgatgtga
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