Panicum virgatum (switchgrass): 120707717
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Entry
120707717 CDS
T07260
Name
(RefSeq) ABC transporter B family member 5-like isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120707717
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120707717
04147 Exosome [BR:
pvir04147
]
120707717
04090 CD molecules [BR:
pvir04090
]
120707717
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120707717
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120707717
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120707717
CD molecules [BR:
pvir04090
]
Proteins
120707717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_29
AAA_16
RsgA_GTPase
Zeta_toxin
AAA_30
AAA_21
AAA_15
AAA_24
DUF87
DUF815
ATPase
Motif
Other DBs
NCBI-GeneID:
120707717
NCBI-ProteinID:
XP_039848644
LinkDB
All DBs
Position
5K:44928556..44938650
Genome browser
AA seq
1275 aa
AA seq
DB search
MAGRARDTAGEGGETTAAEGRRSGGGNANASRAGAAAAAKVAPFLGMLRCADRADAALMA
VGAAANGMSEPLMSVVFAAVIECFGAGDDATVLHRVSKVIMYYIYLGIGTAVASFLQVSC
WTVAGERQATRLRSLYLEAVLRQDIAFFDVEMTTAEAASRMSADTVLIQDALGEKVGKYI
QLVTSFVGGFIVGFVRGWMLALVVLACIPPSILSFATVSRLRARISGKRQESYGDAGNIV
EQTIGAIRTVVSFNGEKKAIAMYNNHIKRAYKATLMEGIITGLGVGCVFFVVFCSYSLAF
WYGARLIIDKGYTGGQVFNIVFAILTGSIAIGTASPSISAIAEGQSAALRLFDVINRKPN
IDITETSRIVLEDIKGDVELKDVFFRYPARPEQLILDGLCLQVPSGTTMAIVGESGSGKS
TIISLVERFYDPQTGEVLVDGVNIKSLQLHWLRGKISLVSQEPLLFMTSIKDNITYGKED
ATLEEIKRAAELANAANFIEKLPNAYETMVGQRGAQLSGGQKQRIAIARAILKNPKILLL
DEATSALDVESERVVQEALNRIMVGRTTLIVAHRLSTISSADCIAVVHQGKVVEQGVHDE
LIKNPDGAYSQLIRLQKAHTRDMHEAPNAEVSGSIYKSRSLSMERSIARDSPNKGQHSFT
KSIGLSGSDELNRQVNTDRQEDEESGDSKVPKKAPIKRLFKLNKPEAPVLILAVIAAFVH
GLMFPSFSIMMSGGIRTFYYPPHQLRKDSRFWALMCLLFAVIALISIQLEYFLFGMAGGK
LIQRVRSLTFQSIVHQEVSWFDEPSNSSGALGARLYIDALNIRRLVGDNLAILVQCIVTL
IAGFSIAFASDWKLTLIIICVIPVVGSQNYIQVKFLKGFSEDAKVMYEDASQVVTEAIGN
IRTVASFCAEKRVITSYTQKCKASMKQGIRSGTVGGLGFSFSNLMMYLAYALCFYVGALF
VHEGKSTFKDVFRVYFALIFTAFGVSQTSGMATDSTKAQESTVSILAIIDRKPKINSTSD
EGIMLEKVDGNIDFRHVNFKYPSRPDVQVLSDFTLGIPARKTVALVGESGSGKSTIIALL
ERFYDPDSGTISLDGAELKKLKLSWLRDQMGLVSQEPVLFNDTIHANIAYGKQGEVKEDE
IIAAAKAANAHEFISSLPQGYSTTVGERGTQLSGGQKQRVAIARAILKDPRILLLDEATS
ALDAEAERIVQDALDQVTVSRTTIVVAHRLSTIKGADIIAVIKDGKVAEKGKHESLVGIK
GGVYASLVEVHSKSA
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggctgggagagcgcgggacacagcaggcgagggtggcgagacgacggcggcggagggg
cgacgatccggcggcggcaacgcaaacgctagcagagcgggtgcggcggcggcggccaaa
gtggcgccgttcctgggcatgctccggtgcgccgaccgcgcggacgcggcgctgatggcg
gtcggcgcggcggccaacggcatgtcggagccgctcatgtcggtcgtgttcgccgccgtc
atcgagtgcttcggcgccggcgacgacgccacggtgctccaccgggtcagcaaggttatc
atgtactacatctatctgggaatcggaacagcagttgcttcctttctccaggtgtcatgt
tggacagtagctggagaaaggcaggcgacacggttgcgatcgttatacctcgaagctgtt
ctcaggcaagacattgcattctttgacgtagagatgacaactgcggaagcagcttcaaga
atgtctgcagacaccgtactcatccaagacgccctcggagagaaggtagggaagtacata
cagcttgtgacaagcttcgttggtggctttatcgttggattcgtaagaggctggatgctg
gctcttgttgtgcttgcgtgcatacctccaagcattctgtcctttgcaactgtctcccga
ctgcgagctcgaatatctggcaagaggcaagaatcatatggagatgcagggaatattgtt
gagcaaaccattggagcgataagaacagtcgtatctttcaatggcgagaagaaagcaatt
gcaatgtacaataatcacataaaaagggcatacaaggctactctcatggaagggattatc
actggtcttggagtaggctgcgtattttttgttgtcttctgcagttactctctagccttc
tggtatggcgccaggttaatcatcgacaaaggatatactggtgggcaggtcttcaacatc
gtatttgcaattttaactggttcaattgctataggtactgcatcaccatctatttctgca
attgcggaaggtcagtctgcagcactgaggctgttcgacgttatcaacagaaaaccaaat
attgatatcaccgaaacatccagaattgtattagaagatatcaagggagatgttgaactc
aaggatgtgttcttcaggtaccctgcaaggcctgaacagttgatacttgatggcttgtgc
ctacaagtacctagtggtaccacaatggctatagttggggagagtggaagtggcaagtca
acaataattagtctagtagagagattttacgacccacagactggtgaagtgttggtagat
ggagtcaacatcaagagtctgcaactccactggttaagaggaaagatcagccttgtcagc
caagaaccattgctttttatgacctccattaaggataacataacctatggtaaagaggat
gctacacttgaagagatcaaaagagcagctgagcttgcaaatgcagcaaatttcattgaa
aagctgcctaatgcatatgagacaatggttggtcaacgtggtgctcagctttctgggggg
cagaagcaaaggattgccatcgcaagagcaatccttaaaaacccaaaaatccttctttta
gatgaagctacaagtgctttggacgtagagtctgaaagggtagttcaagaagcactgaat
cggatcatggtagggagaactacactcattgtagctcaccgcctgagcaccatcagcagt
gcagactgcatagcagtagttcatcaagggaaagtagttgagcaaggtgtccatgatgag
ttgattaagaatcctgatggagcttattctcaactcatcaggctacagaaggcacatact
agagatatgcatgaggctccaaatgctgaagtttcaggttcaatatataaaagtagaagt
ttatctatggaacgatcaatagccagagattctcccaacaaaggacagcattccttcaca
aaatccatagggctgtctggatctgatgaattgaacaggcaagttaatacagacagacag
gaagacgaagaatctggtgatagtaaggttccgaagaaagcaccaatcaaacgactattt
aaacttaataagccagaagcgccagttctcatattagctgttatagctgctttcgtgcat
ggtcttatgttcccatcattcagtataatgatgtccggtggtataagaactttctactat
ccaccacaccaacttcgaaaagattctaggttttgggcattgatgtgccttctgttcgca
gtcattgccctgatttcaatccaactagaatactttctatttgggatggctggtgggaaa
cttatacaacgtgtccgctctttgactttccaaagcatagtgcatcaagaagtttcatgg
tttgatgaaccttcaaattccagtggggcacttggcgcgaggctctatattgatgctttg
aacatccgacgcctcgttggagataacttggccatactagtgcagtgcatagtaacacta
atagctggattttccatagcatttgcttctgactggaagctcacactgatcatcatatgt
gtgattcctgtggtgggctcacaaaattatattcaagtcaaatttttgaaagggttcagt
gaagatgctaaggtgatgtatgaagatgcaagtcaagtagtgactgaggcaattggtaat
atacggactgtagcatctttctgtgcagagaagagagtaattacatcatacacccaaaaa
tgcaaagcgtcaatgaaacagggcattcgaagtggaacggttggaggccttggtttcagt
ttctcgaacttaatgatgtatcttgcatatgctctttgtttctatgttggtgcactgttt
gtacatgaaggcaaatcaacttttaaagacgtttttagagtttattttgctttgattttc
acagcttttggagtttcccaaacaagtggaatggcaacagattcaacaaaagcccaggaa
tccactgtttctatactagctatcatagacaggaagcctaaaatcaactcgactagtgat
gaaggcattatgctagaaaaagttgatggaaatatagatttcagacatgtaaacttcaaa
tacccttcccgcccagatgtccaagtgctcagtgactttactttgggcattccagcaaga
aagactgttgcacttgttggagagagtggtagtggtaagtccacaataattgctttgctc
gagcgattttatgacccagattctggcacaatatcacttgatggagcagaacttaaaaaa
ctaaaactgagttggttaagagaccaaatgggattagtgagccaagaacctgtacttttc
aatgacacaattcatgccaacatagcatatggaaaacaaggagaagtaaaggaggatgag
attattgctgctgccaaggcagccaatgcccatgagttcatatctagcttgcctcaggga
tatagcactactgttggtgagagaggaacacagctctctggtgggcaaaagcaacgggta
gcaattgcaagggccattttgaaggacccaagaatacttctactggacgaggcaacaagt
gccctggatgctgaagcggagcgtattgttcaagatgcattggatcaagtgacggtcagc
aggaccaccattgtcgtggcacaccgactgtccacaatcaaaggggcagatataattgca
gtcatcaaagatggtaaggttgctgaaaagggaaagcatgaatccctagtgggcatcaag
ggtggtgtttatgcatcgctggtggaagtacactccaaatcagcataa
DBGET
integrated database retrieval system