KEGG   Panicum virgatum (switchgrass): 120707717
Entry
120707717         CDS       T07260                                 
Name
(RefSeq) ABC transporter B family member 5-like isoform X1
  KO
K05658  ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir02010  ABC transporters
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    120707717
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:pvir02000]
    120707717
   04147 Exosome [BR:pvir04147]
    120707717
   04090 CD molecules [BR:pvir04090]
    120707717
Enzymes [BR:pvir01000]
 7. Translocases
  7.6  Catalysing the translocation of other compounds
   7.6.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.6.2.2  ABC-type xenobiotic transporter
     120707717
Transporters [BR:pvir02000]
 ABC transporters, eukaryotic type
  ABCB (MDR/TAP) subfamily
   ABCB1, 4, 5 subgroups
    120707717
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   120707717
CD molecules [BR:pvir04090]
 Proteins
  120707717
SSDB
Motif
Pfam: ABC_membrane ABC_tran SMC_N ABC_ATPase AAA_22 AAA_29 AAA_16 RsgA_GTPase Zeta_toxin AAA_30 AAA_21 AAA_15 AAA_24 DUF87 DUF815 ATPase
Other DBs
NCBI-GeneID: 120707717
NCBI-ProteinID: XP_039848644
LinkDB
Position
5K:44928556..44938650
AA seq 1275 aa
MAGRARDTAGEGGETTAAEGRRSGGGNANASRAGAAAAAKVAPFLGMLRCADRADAALMA
VGAAANGMSEPLMSVVFAAVIECFGAGDDATVLHRVSKVIMYYIYLGIGTAVASFLQVSC
WTVAGERQATRLRSLYLEAVLRQDIAFFDVEMTTAEAASRMSADTVLIQDALGEKVGKYI
QLVTSFVGGFIVGFVRGWMLALVVLACIPPSILSFATVSRLRARISGKRQESYGDAGNIV
EQTIGAIRTVVSFNGEKKAIAMYNNHIKRAYKATLMEGIITGLGVGCVFFVVFCSYSLAF
WYGARLIIDKGYTGGQVFNIVFAILTGSIAIGTASPSISAIAEGQSAALRLFDVINRKPN
IDITETSRIVLEDIKGDVELKDVFFRYPARPEQLILDGLCLQVPSGTTMAIVGESGSGKS
TIISLVERFYDPQTGEVLVDGVNIKSLQLHWLRGKISLVSQEPLLFMTSIKDNITYGKED
ATLEEIKRAAELANAANFIEKLPNAYETMVGQRGAQLSGGQKQRIAIARAILKNPKILLL
DEATSALDVESERVVQEALNRIMVGRTTLIVAHRLSTISSADCIAVVHQGKVVEQGVHDE
LIKNPDGAYSQLIRLQKAHTRDMHEAPNAEVSGSIYKSRSLSMERSIARDSPNKGQHSFT
KSIGLSGSDELNRQVNTDRQEDEESGDSKVPKKAPIKRLFKLNKPEAPVLILAVIAAFVH
GLMFPSFSIMMSGGIRTFYYPPHQLRKDSRFWALMCLLFAVIALISIQLEYFLFGMAGGK
LIQRVRSLTFQSIVHQEVSWFDEPSNSSGALGARLYIDALNIRRLVGDNLAILVQCIVTL
IAGFSIAFASDWKLTLIIICVIPVVGSQNYIQVKFLKGFSEDAKVMYEDASQVVTEAIGN
IRTVASFCAEKRVITSYTQKCKASMKQGIRSGTVGGLGFSFSNLMMYLAYALCFYVGALF
VHEGKSTFKDVFRVYFALIFTAFGVSQTSGMATDSTKAQESTVSILAIIDRKPKINSTSD
EGIMLEKVDGNIDFRHVNFKYPSRPDVQVLSDFTLGIPARKTVALVGESGSGKSTIIALL
ERFYDPDSGTISLDGAELKKLKLSWLRDQMGLVSQEPVLFNDTIHANIAYGKQGEVKEDE
IIAAAKAANAHEFISSLPQGYSTTVGERGTQLSGGQKQRVAIARAILKDPRILLLDEATS
ALDAEAERIVQDALDQVTVSRTTIVVAHRLSTIKGADIIAVIKDGKVAEKGKHESLVGIK
GGVYASLVEVHSKSA
NT seq 3828 nt   +upstreamnt  +downstreamnt
atggctgggagagcgcgggacacagcaggcgagggtggcgagacgacggcggcggagggg
cgacgatccggcggcggcaacgcaaacgctagcagagcgggtgcggcggcggcggccaaa
gtggcgccgttcctgggcatgctccggtgcgccgaccgcgcggacgcggcgctgatggcg
gtcggcgcggcggccaacggcatgtcggagccgctcatgtcggtcgtgttcgccgccgtc
atcgagtgcttcggcgccggcgacgacgccacggtgctccaccgggtcagcaaggttatc
atgtactacatctatctgggaatcggaacagcagttgcttcctttctccaggtgtcatgt
tggacagtagctggagaaaggcaggcgacacggttgcgatcgttatacctcgaagctgtt
ctcaggcaagacattgcattctttgacgtagagatgacaactgcggaagcagcttcaaga
atgtctgcagacaccgtactcatccaagacgccctcggagagaaggtagggaagtacata
cagcttgtgacaagcttcgttggtggctttatcgttggattcgtaagaggctggatgctg
gctcttgttgtgcttgcgtgcatacctccaagcattctgtcctttgcaactgtctcccga
ctgcgagctcgaatatctggcaagaggcaagaatcatatggagatgcagggaatattgtt
gagcaaaccattggagcgataagaacagtcgtatctttcaatggcgagaagaaagcaatt
gcaatgtacaataatcacataaaaagggcatacaaggctactctcatggaagggattatc
actggtcttggagtaggctgcgtattttttgttgtcttctgcagttactctctagccttc
tggtatggcgccaggttaatcatcgacaaaggatatactggtgggcaggtcttcaacatc
gtatttgcaattttaactggttcaattgctataggtactgcatcaccatctatttctgca
attgcggaaggtcagtctgcagcactgaggctgttcgacgttatcaacagaaaaccaaat
attgatatcaccgaaacatccagaattgtattagaagatatcaagggagatgttgaactc
aaggatgtgttcttcaggtaccctgcaaggcctgaacagttgatacttgatggcttgtgc
ctacaagtacctagtggtaccacaatggctatagttggggagagtggaagtggcaagtca
acaataattagtctagtagagagattttacgacccacagactggtgaagtgttggtagat
ggagtcaacatcaagagtctgcaactccactggttaagaggaaagatcagccttgtcagc
caagaaccattgctttttatgacctccattaaggataacataacctatggtaaagaggat
gctacacttgaagagatcaaaagagcagctgagcttgcaaatgcagcaaatttcattgaa
aagctgcctaatgcatatgagacaatggttggtcaacgtggtgctcagctttctgggggg
cagaagcaaaggattgccatcgcaagagcaatccttaaaaacccaaaaatccttctttta
gatgaagctacaagtgctttggacgtagagtctgaaagggtagttcaagaagcactgaat
cggatcatggtagggagaactacactcattgtagctcaccgcctgagcaccatcagcagt
gcagactgcatagcagtagttcatcaagggaaagtagttgagcaaggtgtccatgatgag
ttgattaagaatcctgatggagcttattctcaactcatcaggctacagaaggcacatact
agagatatgcatgaggctccaaatgctgaagtttcaggttcaatatataaaagtagaagt
ttatctatggaacgatcaatagccagagattctcccaacaaaggacagcattccttcaca
aaatccatagggctgtctggatctgatgaattgaacaggcaagttaatacagacagacag
gaagacgaagaatctggtgatagtaaggttccgaagaaagcaccaatcaaacgactattt
aaacttaataagccagaagcgccagttctcatattagctgttatagctgctttcgtgcat
ggtcttatgttcccatcattcagtataatgatgtccggtggtataagaactttctactat
ccaccacaccaacttcgaaaagattctaggttttgggcattgatgtgccttctgttcgca
gtcattgccctgatttcaatccaactagaatactttctatttgggatggctggtgggaaa
cttatacaacgtgtccgctctttgactttccaaagcatagtgcatcaagaagtttcatgg
tttgatgaaccttcaaattccagtggggcacttggcgcgaggctctatattgatgctttg
aacatccgacgcctcgttggagataacttggccatactagtgcagtgcatagtaacacta
atagctggattttccatagcatttgcttctgactggaagctcacactgatcatcatatgt
gtgattcctgtggtgggctcacaaaattatattcaagtcaaatttttgaaagggttcagt
gaagatgctaaggtgatgtatgaagatgcaagtcaagtagtgactgaggcaattggtaat
atacggactgtagcatctttctgtgcagagaagagagtaattacatcatacacccaaaaa
tgcaaagcgtcaatgaaacagggcattcgaagtggaacggttggaggccttggtttcagt
ttctcgaacttaatgatgtatcttgcatatgctctttgtttctatgttggtgcactgttt
gtacatgaaggcaaatcaacttttaaagacgtttttagagtttattttgctttgattttc
acagcttttggagtttcccaaacaagtggaatggcaacagattcaacaaaagcccaggaa
tccactgtttctatactagctatcatagacaggaagcctaaaatcaactcgactagtgat
gaaggcattatgctagaaaaagttgatggaaatatagatttcagacatgtaaacttcaaa
tacccttcccgcccagatgtccaagtgctcagtgactttactttgggcattccagcaaga
aagactgttgcacttgttggagagagtggtagtggtaagtccacaataattgctttgctc
gagcgattttatgacccagattctggcacaatatcacttgatggagcagaacttaaaaaa
ctaaaactgagttggttaagagaccaaatgggattagtgagccaagaacctgtacttttc
aatgacacaattcatgccaacatagcatatggaaaacaaggagaagtaaaggaggatgag
attattgctgctgccaaggcagccaatgcccatgagttcatatctagcttgcctcaggga
tatagcactactgttggtgagagaggaacacagctctctggtgggcaaaagcaacgggta
gcaattgcaagggccattttgaaggacccaagaatacttctactggacgaggcaacaagt
gccctggatgctgaagcggagcgtattgttcaagatgcattggatcaagtgacggtcagc
aggaccaccattgtcgtggcacaccgactgtccacaatcaaaggggcagatataattgca
gtcatcaaagatggtaaggttgctgaaaagggaaagcatgaatccctagtgggcatcaag
ggtggtgtttatgcatcgctggtggaagtacactccaaatcagcataa

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