Panicum virgatum (switchgrass): 120707726
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Entry
120707726 CDS
T07260
Name
(RefSeq) ABC transporter B family member 9-like isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120707726
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120707726
04147 Exosome [BR:
pvir04147
]
120707726
04090 CD molecules [BR:
pvir04090
]
120707726
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120707726
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120707726
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120707726
CD molecules [BR:
pvir04090
]
Proteins
120707726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
ABC_ATPase
SMC_N
AAA_22
AAA_29
AAA_16
RsgA_GTPase
AAA_15
AAA_21
Zeta_toxin
AAA_23
DUF87
AAA_30
AAA_24
APS_kinase
AAA_7
AAA_25
YobI-ATPase
DLIC
Motif
Other DBs
NCBI-GeneID:
120707726
NCBI-ProteinID:
XP_039848656
LinkDB
All DBs
Position
5K:45020934..45027629
Genome browser
AA seq
1276 aa
AA seq
DB search
MDAAAAAAGGRDGEEKKEEAKKKGSGAGGAGDAGDKRVPFTALFRYADGTDVLLMLLGTA
GALANGVTQPIMTVIFGQVINAFGGSVDTGDVLQRVNKAVLNFVYLGIATAVVSFLQVSC
WTMTGERQATHIRSLYLKSVLRQEIAFFDVEMTTGQIVSRMSGDTVLVQDAIGEKVGKFQ
QLIATFIGGFVIAFVKGWLLSLVMLASIPPVVVAGGIVSKMLSRISSKGQTSYGDAGNVV
EQTLGNIKTVVSFNGEKQAIATYNKLIHKAYKAAVEEGITNGFGMGSVFFIFFSSYGLAI
WYGGKLILSKGYSGGDVINILFAIMTGAMSLGNATPCMAAFAEGQSAAYRLFATIKRKPE
IDPDDPTGKQLEDIKGDVDLKEVYFSYPARPEQLIFDGFSLHVSSGTTMAIVGESGSGKS
TVISLVERFYDPQAGEVLIDGMNIKSLRLDWIRGEIGLVNQEPLLFMTSIKDNISYGKED
ATIEEIKRAAELANAANFIDKLPNGYDTMVGQRGAQLSGGQKQRIAIARAIIKDPRILLL
DEATSALDVESERIVQEALNRIMVNRTTLVVAHRLTTVRNADCISVVQQGKIVEQGPHDK
LIMNSDGAYSQLIRLQESQEEEDKQLDRRMSDPRSKSRSLSLKRSISRGSTGNSSRHSLT
LPFGMPGSFELLEGDDANRENQKERADDSEAPKKAPMGRLACLNKPELPILLLGAIAAGV
HGTIFPMFGLMLSNAINTFFEPPHELRKHSSFWGLMCVVLGIISIVSVPVEYFLFGVAGG
KLIERIRTLSFQSIVHQEVAWFDDPKNSSGALGAKLSVDALNVRRLVGDNLALLTQVIST
LITGFVIAFVADWKLTLIILCAMPLSGAQGYAQIKFLKGFSQDAKMLYEDASQVATDAIS
SIRTVASFCAEKRVMTIYDHKCEASKNQGVRTGMVGGLGFGFSFMMMYLTYGLCFYVGGQ
FVRHNKSSFGDVFRVFFALMMATIGISQTSALASDSTKAKDSSISIFALLDRKSKIDSGS
DEGLTLDEVKGDIDFRHVSFKYPSRPDVQIFSDFTLHIPSGKTVALVGESGSGKSTIISL
LERFYNPDSGTISLDGVEIKSLKVNWLRDQMGLVGQEPVLFNDTIRANIAYGKHGEVTEE
ELIKVAKAANAHEFISSLPQGYDTTVGERGVQLSGGQKQRVAIARAILKDPRILLLDEAT
SALDAESERIVQDALDNVMVGRTTIIVAHRLSTIKSADIIAVLKDGAIVEKGRHETLMNI
KDGFYASLVELRSSSS
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgcggcagctgctgcgggagggagggatggcgaggagaagaaggaagaagca
aagaagaaggggagcggcgccggcggcgccggcgacgccggcgacaagagggtgccgttc
acggcgctgttccggtacgccgacggcacggacgtcctgctgatgctcctcggcacggcg
ggggcgctggccaacggcgtcacgcagcccatcatgacggtcatcttcggacaggtcatc
aacgccttcggcggctccgtcgacacgggcgacgtcctccagcgcgtcaacaaggcagtt
ctgaattttgtctacctgggcattgcaacagctgttgtttcctttctccaggtgtcatgc
tggacaatgacaggagaaagacaggcaacacacattcgatctctgtacctcaaatctgtc
ttgaggcaagaaatagcattctttgatgtagaaatgacaactgggcaaattgtttcaagg
atgtctggagataccgtgttggttcaggatgccattggtgaaaaggtcggcaagttccaa
caacttattgctaccttcataggtggctttgtaatagcattcgtaaaaggatggctttta
tctcttgtcatgttggcaagcatacctcccgttgtcgttgctggaggaattgtctcaaaa
atgctctctagaatctctagcaaggggcaaacatcatatggcgatgcagggaatgtagtt
gaacagacgcttggtaacattaagacagtggtctccttcaacggtgagaagcaggctatt
gcaacctacaataaactcatacacaaggcatataaggcagctgttgaggaaggaattaca
aatggttttggcatgggttctgttttctttatatttttctcaagctatggattagccata
tggtacggcggcaagttgattcttagcaaaggttactcaggaggagacgtcatcaacatc
ttgtttgctataatgactggtgcaatgtctttaggtaatgcaacaccctgcatggcagcc
tttgcagaaggacaatctgcagcatatagattgttcgcgacaatcaaaaggaaaccagaa
attgaccctgatgacccaactggtaagcagttagaagacatcaagggtgatgttgaccta
aaggaagtgtacttcagctacccagcaagaccagagcaactaatatttgatggattctca
ttacatgtgtctagcggcactacaatggctatagttggggagagtggaagtggcaaatca
actgtgataagtcttgtagagagattctatgatccacaggctggtgaggttttaattgat
ggaatgaacattaagagtttgcgacttgattggataagaggggagatcggccttgttaac
caagagccgttgctttttatgacttctatcaaagataacatatcatatggcaaagaggat
gccacaattgaagagatcaaaagagcagctgagcttgctaatgcagcaaatttcatcgat
aaattgcccaacggctatgacacaatggttggccaacgtggtgctcagctctctgggggc
caaaagcaaaggatcgctattgcaagagcaataattaaagaccccagaattcttttgtta
gatgaggcaactagtgcattggatgtggagtcagagcggattgttcaggaagcgcttaat
aggatcatggtgaatagaacaacactagtggttgcacatcgtctgactactgtgaggaat
gctgattgcatatcagttgttcaacaagggaaaatagttgaacaaggtccccatgacaag
ttgataatgaattctgatggtgcttattctcaacttattcgtctgcaagaaagccaagaa
gaggaagataagcaattagatcggcgcatgtctgatccaaggtctaaaagtagaagcctc
tcactgaagcgatcaataagcagaggttccacaggaaacagcagtcgccattctttgacg
ctcccatttggtatgcctggttcatttgagttgcttgaaggagatgatgcaaacagggag
aatcagaaagagcgggctgatgatagtgaggcccctaagaaagctcctatgggacggcta
gcttgtcttaacaagccagagctaccaattcttttgttaggagcaatagcagctggagtc
catggaacaatttttccaatgtttggtctaatgctttctaatgccatcaacactttcttt
gagccgcctcatgaactaagaaagcattcaagcttttggggtttgatgtgtgttgtgttg
ggtattatatcgatagtatcagtaccagtggagtatttcttatttggagtagccggggga
aagcttatcgagcgtattcgtaccttgtcatttcagagcattgtgcaccaagaagttgct
tggtttgatgatcccaaaaactccagtggagcgcttggtgcaaagttgtcagttgatgct
ctgaatgttcgacgattagtgggtgataacttggccttgttgactcaggtcatctcaaca
ctaatcactggatttgtcattgcttttgtggcagactggaagctcacattgatcatcctt
tgtgcaatgccactatcgggtgctcaaggttatgcacaaataaagttcttgaagggattc
agtcaagatgccaagatgctgtatgaagatgcaagtcaagtggctactgatgcaatcagt
agtatcaggactgtagcttctttttgtgctgagaaaagagtcatgacaatctatgatcat
aaatgtgaagcttccaagaatcaaggggtcagaacaggaatggtcggtggccttggtttt
ggtttctcattcatgatgatgtaccttacatatggtctctgtttctatgttggtgggcaa
ttcgtgcgtcataacaagtctagttttggagacgttttcagggttttctttgcactgatg
atggcaacaattggcatatctcaaacaagtgcattggcttctgattctacaaaggcgaag
gattcatctatctccatatttgctttattggaccgaaagtcaaaaatcgattcaggcagt
gatgaaggtttgacattagatgaggtcaagggtgacatcgatttccgacatgttagcttc
aagtatccaagtcgtccagatgttcaaatcttcagtgattttaccctgcacattccctct
ggaaagactgtagcacttgtgggagagagtggcagtggaaaatcaacaataatttctttg
ctggaacgattctacaatcctgactctggtacaatctcattggacggggtagaaatcaag
agcttaaaagtcaattggctaagggaccaaatggggttggtgggccaagagcctgtgctc
ttcaacgacacaatccgcgccaacatagcatatgggaagcatggggaggtcactgaggag
gagctcatcaaggtcgcaaaagcggccaatgcgcatgagttcatatcaagtcttccccag
gggtatgacactaccgttggagagaggggggttcagctatccggtggccagaagcaacgg
gtggccattgcacgggctatactaaaagatcctaggattcttcttcttgatgaggcaaca
agcgccttggatgctgagtctgagcgcattgtgcaagatgccttggataatgtcatggtt
ggcaggaccacaattattgtggcacaccgcctctcaacgatcaaaagtgctgatattatt
gcagttctcaaggatggcgcgatagtggagaaaggaagacatgagacgttgatgaacatc
aaagatggattctatgcttcgctagttgaacttcgttcatcttcatcgtag
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