Panicum virgatum (switchgrass): 120707756
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Entry
120707756 CDS
T07260
Name
(RefSeq) eukaryotic translation initiation factor 2A isoform X1
KO
K15026
translation initiation factor 2A
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120707756
03012 Translation factors [BR:
pvir03012
]
120707756
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120707756
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
eIF-2A
120707756
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
eIF2A
WDR55
WD40_CDC20-Fz
Motif
Other DBs
NCBI-GeneID:
120707756
NCBI-ProteinID:
XP_039848694
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Position
1K:40246827..40250972
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AA seq
525 aa
AA seq
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MASPPPALEILVREPDGFSVWSGPPYPPGTTSPPQRLPKTACSATSFSADGARLLATVAS
ASATVYDCRTLAVVKCFELPGLLAAALSPTGAYLQTFQKSSSPQEKNVTVWQVDTAVALY
QHYQKSMSKATWPMIQFSADESVGCRMMPNEIQFFDPKDFIKGVLSRIRMPGIAAMQLAT
APGSHVAGFVPEAKGIPASVQIFSCNKDAQNQVVARRSFFRCSTVQLHWNKGSTGLLVLA
QADVDKTNQSYYGETKLNYLTTDRAFEGIVPLKKDGPVHDVQWSSLGSEFAVVYGFMPAK
ATIFNKKCNPLLELGEGPYNTIRWNPKGRFVVLAGFGNLPGDMAFWDYSEKKLVAKTKAE
WSVTSEWSPDGRHFMTATTAPRLQIDNCIKIFDHNGSLQFKKMFEKLYQADWKPETPERF
GDITDLATSLSSLKIEETKKQVSAQGSKSAQTSSKAPLTASTASKPTAYRPPHAKGSAEV
QDKLFGGLAPTGGEMSKNALRNKKRREKQKEKKAAEASGSPADES
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccaccacctgccctcgagatcctagtgcgcgagcccgacggcttctcggtg
tggtccggcccgccctacccgccgggcaccaccagcccgccgcagaggctccccaagacg
gcgtgcagcgccacctccttctcggccgacggtgcccgcctcctcgccacggtggcctcg
gcctcggccactgtttacgactgccgcacgctcgccgtcgtcaagtgcttcgagctcccg
ggactcctcgccgcggcgctgtcgcccacgggggcgtatctgcagaccttccagaaatcc
tcctcgccgcaggagaagaatgtcacggtctggcaagtcgacaccgctgtcgccctctac
caacactaccagaagagcatgtctaaggccacctggccaatgatccagttttctgcggat
gagtcagtcggttgccggatgatgcctaatgagatacaattctttgatccaaaggatttc
ataaaaggggttttgagtaggataagaatgcctggcatagctgcaatgcagctagcaact
gcaccaggatctcatgttgctggatttgtcccagaggctaagggtattccagccagtgtt
cagatattctcttgcaacaaggatgctcaaaatcaagttgttgctcgcaggagctttttt
cgctgttccactgttcaattacactggaacaaggggtctactggactacttgttcttgct
caggctgatgttgataaaaccaaccagagttactatggtgaaaccaagctgaactacttg
acaactgaccgggcctttgaaggaattgttcctcttaaaaaggatgggccagtgcatgat
gtccaatggtcttctttgggctctgaatttgctgtggtttatggatttatgccggccaag
gctacaatattcaacaaaaagtgcaaccctcttcttgagcttggtgaaggaccttacaat
accataagatggaaccccaaaggacgatttgttgtgttagcaggatttggtaatttgcct
ggtgatatggcgttctgggattattcagaaaagaaattggtggcgaaaacaaaggcagaa
tggtctgtcacaagtgaatggtcccctgatggtcgtcactttatgactgctacaacagct
ccaaggctccaaatagacaattgtatcaaaatatttgaccacaatggatctttgcagttt
aagaagatgtttgaaaagctgtatcaggctgattggaagcccgaaacacctgaaagattt
ggtgacattactgacctggcaacttctttgagtagcttaaagattgaagaaacaaagaaa
caagtttcagcacaaggttccaaatcagcacaaacctcaagcaaggcccctctgactgca
agtacagcatcgaaacctacagcgtaccgtccacctcatgcaaaaggttctgcagaagtt
caggataagctttttggtggacttgctcctacagggggagagatgagcaagaatgcattg
agaaacaagaagcgcagagagaaacagaaggagaaaaaagctgctgaagcgtcaggcagt
cctgctgatgaaagttga
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