Panicum virgatum (switchgrass): 120707828
Help
Entry
120707828 CDS
T07260
Name
(RefSeq) alpha-amylase 3, chloroplastic-like
KO
K01176
alpha-amylase [EC:
3.2.1.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120707828
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.1 alpha-amylase
120707828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_N_CWD1
Alpha-amyl_C2
Alpha-amylase
Glyco_hydro_70
Motif
Other DBs
NCBI-GeneID:
120707828
NCBI-ProteinID:
XP_039848787
LinkDB
All DBs
Position
5K:46295251..46305887
Genome browser
AA seq
881 aa
AA seq
DB search
MSVGSGCIPAIPGVAPQPRAGLLGGAFLQVAAARPRVGRCRATQHGRVRLGGRVVARAGA
AETPVAGADEGAGAVFSEKFPLRRCQTVEGKASVRVDAEPDGDGKCKVVVGCDVAGKWIL
HWGVSYDGEHGSEWDQPPSEMRPAGSVPIKDYAIETPLEILPNSEGWYEVQIKFDKDTPI
AAINFVLKEEETGAWFQHKGRDFRIPLRGSFDGGVPFGANQDIGVWPGDLGHLKKHEGSN
AQPQETIPGGTNLSGKHISGFYQEFQIIKSEYTQNFVTVTVKRDNETHKRLVEFDTDIPG
EVILHWGVCRDNNMTWEILPEPHPPTTRIFRQKALQTLLQAKADGRGNSLSFLLDAQYSG
LFFVLKLDEYTWLRNLENGSDFFISLTTMEQRGSTQDLGKVEPQKVDKPSQADGIISGIR
NLVVGLSSRRGQRAKNKVLQEDILQEIERLAAEAYSIFRSPTIDSVDASVDLDDPSIAKP
ACSGTGSGFEILCQGFNWESHKSGKWYVELGKKAKELSSLGFTIVWSPPPTDSVSPEGYM
PRDLYNLNSRYGTMDELKELVKIFHEADIKVLGDAVLNHRCAQFQNNNGVWNIFGGRMNW
DDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRNDLKEWLCWMRKEVGYDGWRLD
FVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTAG
AFDVTTKGILHAALERSEYWRLSDEKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPY
GMELQGYAYILTHPGTPAVFYDHIFSHLQPEIAKFINIRQRQKIHCRSKIKILKAERSLY
AAEIDEKLIMKIGSEHFEPSGTQNWIVAAEGQEYKIWEESS
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggggagcgggtgtattccggcgatcccgggcgtggccccgcagccgagggcc
gggctgctcgggggcgccttcctgcaggtggccgcggcgcggccgcgggtcgggcggtgc
cgcgccacgcagcacgggcgcgtgaggctcggcggacgcgtcgtggcccgagctggcgcg
gccgagactccggtggctggcgccgacgagggcgccggagccgtgttctccgagaagttc
cccctgcgccgatgccaaacggtggaagggaaggcgtcggtgagggtggacgcggagccg
gatggggacggcaagtgcaaggtcgtggtcggatgcgatgtggcggggaagtggatactg
cactggggtgtctcttacgacggtgagcatgggagcgaatgggatcagcctccttcagaa
atgagaccagctggttctgttccaatcaaggactatgcaattgaaacaccattggagatt
ttacccaattcggagggctggtatgaagtgcaaatcaaatttgataaggatactccaatt
gcagccatcaattttgtcctcaaggaagaggaaacaggtgcatggtttcagcataagggc
agggatttcagaatacccttgcgtggatccttcgacggtggagttccatttggagcgaac
caagatattggtgtatggccaggagatttggggcatttgaagaaacatgagggatctaat
gctcagccacaagaaactatacctgggggtacaaatttaagtggaaaacatatttcaggg
ttctaccaggaattccaaattataaaatcagagtacactcagaactttgtaactgttact
gtgaagagagataatgaaacacataaaaggcttgtggaatttgacactgatattcctgga
gaagttatccttcattggggagtttgcagagataataacatgacatgggagatcctgcca
gaaccacatccaccgacaacgagaatcttccgacagaaagctcttcagaccttgctacag
gcaaaagctgatggaagaggcaattctttatcattcttactagatgcacagtattctggt
ttgttttttgtgctcaaacttgatgagtatacttggttgagaaatctggaaaatggatcc
gatttcttcatttctcttacaacaatggaacaacgtggaagcacccaagatcttggtaag
gttgagccacaaaaagttgacaagccttcacaagctgatggtataatcagtggtataaga
aatctggtggttggcctatcgtctagaagaggtcagagagctaagaataaagttctgcaa
gaggatatcctgcaagaaattgaaaggctagcagcagaagcttatagcatttttaggagc
cctactattgattccgttgatgcgtctgtagatctcgatgatccatcaatcgcaaagcca
gcttgttctggcactggatctggcttcgaaatattgtgccaaggatttaattgggaatct
cataagtcagggaaatggtatgttgaacttggtaaaaaggccaaggagttgtcatccctt
ggttttaccattgtttggtcaccaccacctactgattctgtgtcacctgaaggatacatg
ccaagggatttatataatctgaactccagatatgggaccatggatgagttgaaggagctc
gtgaagattttccatgaagctgacatcaaggttcttggtgatgctgttctaaatcacagg
tgtgctcagtttcagaataacaatggtgtctggaatatttttggtggacgtatgaactgg
gatgatcgagcagttgtagcagatgatccacatttccagggaagaggaaacaagagtagt
ggagacaacttccatgcagcaccaaacattgatcactcccaggagtttgtgaggaatgat
cttaaagaatggctttgctggatgagaaaggaagtagggtatgatggatggagacttgac
tttgttcgtggtttttggggcgggtatgtcaaagattatttggaagcaagtgagccatac
tttgcagtaggagagtactgggactccctcagttacacctatggtgaaatggactacaat
caagatgcccacaggcagagaattgttgattggataaatgctacaaatggaactgccggt
gcatttgatgtcactaccaaaggaatacttcatgcggcgcttgaaagatctgagtattgg
cgtttgtctgatgaaaaaggaaaaccccctggagtattgggttggtggccttctcgagct
gtcacattcatagagaatcatgatactggctctactcagggtcattggagattcccctat
ggtatggagttgcaaggatatgcctacatcctgacgcaccctggcactccagcagtcttc
tatgatcacattttttcgcacttacaaccagagatcgccaaatttatcaacatccgacaa
cgtcaaaagattcattgccgcagcaagatcaagatactcaaggcagaaaggagtttatat
gctgctgaaatcgatgagaagttaataatgaaaataggctcagaacattttgagccaagc
ggtacccagaactggattgttgcagccgagggtcaagaatacaaaatctgggaagagtct
tcatag
DBGET
integrated database retrieval system
