Panicum virgatum (switchgrass): 120707887
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Entry
120707887 CDS
T07260
Name
(RefSeq) putative ABC transporter B family member 8
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120707887
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120707887
04147 Exosome [BR:
pvir04147
]
120707887
04090 CD molecules [BR:
pvir04090
]
120707887
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120707887
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120707887
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120707887
CD molecules [BR:
pvir04090
]
Proteins
120707887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_16
AAA_22
AAA
Zeta_toxin
AAA_29
AAA_30
RsgA_GTPase
ABC_ATPase
AAA_15
HUTI_composite_bact
Motif
Other DBs
NCBI-GeneID:
120707887
NCBI-ProteinID:
XP_039848874
LinkDB
All DBs
Position
5K:complement(46971162..46976742)
Genome browser
AA seq
1227 aa
AA seq
DB search
MRMSAPAGTGGERPMSIRGMFRFADRVDVVLMALGTLGAIGDGCSTNLLLIFASDVMNAL
GYGRGGAGGVDFMREVEKSCLNFIYLAFAVLAVAFMEGYCWSRTSERQVLRIRHLYLQAI
LRQEVGFFDSQEATTSEIINSISKDASLIQEVLSEKVPLFLMHSTVFVSGLAFATYFCWR
LALVSFPLVLLLIIPGLIYGKYLLYLSCQSRHEYAKANSLVEQALGSIKTVYSFTAEKRI
IQKYTAILDKTIKLGIKQGIAKGLAVGFTGLSFAIWAFLAWYGSRLVTHHQASGGRIYAA
GISFVLGGLSLGMALPELKHFTEASVAATRILDRINRVPEINADDPKGLVLDQIRGELQF
ESVRFVYPSRPNMPVLRDFNLQIPAGQTIALVGSSGSGKSTAIALVQRFYDASEGTVKID
GFNIKELQLKSIRSKMGLVSQDHALFGTSIKENILFGKPDATMDEVYAAAMTANAHNFIR
GLPEEYETMIGERGALLSGGQKQRIAIARAIIKNPAILLLDEATSALDSESEKLVQHALD
QASMGRTTLVVAHKLSTVKNADQIAVVDGGTIAEIGTHDELISKGGPYSRLVKLQKMVSY
IDQENEQFRTSSVARTSTSRHSMSRASPMPLTPAVLKEISSDVSPPAPSFSRLLAMNAPE
WRQAVIGSLSALVYGSLQPIYAITIGGMIAAFFVQDHNEMNAIIRRYALIFCSLSMVSIV
VNLLQHYNFAYMGEHLVRRIRVQVLEKILTFEAAWFDEETNSSGSLCSRLSNEASLVKTL
VADRMSLLLQTASGIIIAATMGLIVAWKLALVMIAVQPSTMICYYAKKIVLSNVSRDLAK
AQHQSTQIAIEAVYNHRMVTSFGCSSKVLQLFEHAQEEPLKRARKKSWVAGLTTGLSPCL
SFLSWALDFWYGGKLAQSGEISAGDVFKTFFVLVSTGKLIADAGSMTSDLAKGANAVASV
FEVLDRKSISPQNSQVEKEEQKKKIQGRIEFRKVDFSYPTRPECLILQDFSLDVKAGTSV
GLVGRSGCGKSTIIGLIQRFYDVDRGAVRIDGMDVREMNIIWFRGFTALVSQEPAMFSGS
VRDNIAFGKPEADEEEIVEAAKAANAHEFISSLKDGYDTDCGEHGIQLSGGQKQRIAIAR
AIIRNPAILLLDEATSALDAQSEQVVQEALDRIMSGRTTIMVAHRLNTIKNVDSIAFLGE
GKVVERGSYPQLMNKKGAFYNLATLQK
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgagtgccccggcgggcaccggcggcgagcggccgatgagcatccgcggcatg
ttccggttcgcggaccgggtggacgtcgtgctcatggccctgggcacgctgggggccatc
ggcgacggctgctccaccaacctgctgctcatcttcgccagcgacgtgatgaacgcgctt
gggtacggccgcggcggcgccggcggcgtggatttcatgcgcgaggtggagaagtcgtgc
ctgaatttcatctacctggcgttcgccgtcttggcggtggcgttcatggaagggtactgc
tggagccggacgagcgagcggcaggtgctgcggatccggcacctgtacctgcaggccatc
ctgcggcaggaggtgggcttcttcgactcgcaggaggccaccacctcggagatcatcaac
agcatctccaaggacgcgtccctcatccaggaggtcctcagcgagaaggtccctctattt
ctgatgcactctactgtgttcgtctccggactggccttcgccacttatttctgctggagg
ctggctctggtctcttttcctctggtcctgcttctcataatcccggggctgatctacggc
aagtaccttctctacctctcctgccagtcgcgccacgagtacgccaaggcgaattccctg
gtcgagcaagccctgggctcgatcaagaccgtctactcattcacagccgagaagaggatc
atccagaagtacacggccatccttgacaagacgatcaagctggggataaagcagggcatc
gccaagggtctcgccgttggattcaccggcctttctttcgccatctgggccttcctcgca
tggtacggcagcaggctggtgacacaccatcaggcaagtggtgggaggatatatgctgct
gggatttccttcgtcttgggtggcctatcccttggaatggcactccctgagctgaaacat
ttcactgaggcatctgttgctgccacaagaattctcgaccggataaaccgtgtgcccgag
atcaacgctgacgacccgaagggccttgtcttggaccaaatccggggagagcttcagttt
gaatctgtccgttttgtgtacccgtcaaggccaaacatgccagtcctcagagacttcaac
ctccagattcctgctgggcaaaccattgctctggttgggtctagtggcagcggcaagtca
accgcaatagcgctagtgcaacgcttttatgatgccagtgaaggaactgtcaagattgac
ggtttcaacattaaggaactccaactcaagtcgatcaggagcaaaatggggcttgtcagc
caagatcatgcattgtttggtacttcaataaaagagaacatcctgtttggcaaaccggat
gcgaccatggatgaagtttatgcagcagccatgacagcaaatgctcacaacttcataagg
gggcttcccgaggaatacgagactatgataggcgagcgtggagcattgttatcgggtggc
cagaagcagcgtattgccattgcaagggcaattatcaagaaccctgctatacttttgctt
gacgaagccacgagtgcacttgattcagaatctgagaagttggtgcagcatgcacttgat
caagcatctatgggacggacaactctggtagtagctcataagctttcaaccgtgaagaat
gctgatcaaattgctgtagttgatgggggtacaatagctgaaattggtacacatgatgaa
ctgatcagcaaggggggcccatactctagacttgtgaaattacagaagatggtgagttac
atcgatcaagaaaatgaacaatttaggacttcgtcagtggccaggaccagcaccagccgt
cacagcatgtccagagccagtccaatgccacttacaccagctgtcttaaaggaaattagt
tctgatgtttctccacctgcaccatctttctccaggcttcttgcaatgaatgcaccagaa
tggaggcaggcagtgataggcagtctgtctgcattggtatatggttccttgcagcccatc
tatgccataaccattggaggaatgattgctgcattctttgttcaggaccacaatgagatg
aatgcaatcatcagacggtatgccttgatcttctgctcattgtccatggtatccattgtt
gtaaatctattgcaacactacaactttgcatacatgggggagcatcttgttaggcgcatc
cgagtccaagtacttgaaaagatcttaacctttgaggcagcatggtttgatgaagaaaca
aattcaagtggttctttgtgctctcggctaagcaatgaagcttctcttgtcaaaaccctt
gttgcagacagaatgtccttgctgcttcaaacagcttctggaattataattgcagcgaca
atgggcctgatagtagcttggaagcttgctcttgtcatgatagctgtacaaccatctaca
atgatatgctactatgccaaaaagatagtactctcaaatgtttcaagggacttggcaaag
gctcagcatcaaagtactcagattgcaatagaagctgtttacaaccacaggatggtaacc
tcctttgggtgctcatcaaaggttcttcagctctttgagcatgcacaagaggaaccactg
aaaagagcaaggaagaagtcatgggtagcagggctcaccacaggattgtcaccttgcctc
tcattcttatcatgggcactggacttctggtatggcgggaagctggcacagtctggagag
atctctgcgggtgatgttttcaaaacctttttcgtcctagtgagcacaggaaagctgatt
gctgatgctggtagcatgacatcagacctggcaaagggagcaaatgcagttgcttcagta
tttgaagtgctagacaggaaatctatctctccacagaattcacaggtggaaaaggaagaa
cagaagaagaaaatacaaggaagaatagagttcagaaaggtagatttttcatatccaaca
agaccagaatgcctcatcctacaggattttagcttggatgtgaaagcaggaacaagtgtt
ggactggttgggagaagtggttgtggtaaatctactatcataggtttgatccaaaggttc
tatgatgttgatagaggagccgtaaggattgatggcatggatgtgcgggagatgaatatt
atttggtttcgaggatttacagctctagttagtcaggagccagcaatgttttcaggtagt
gtcagggataacattgctttcggtaaaccagaagcagatgaagaggagattgtggaggct
gcaaaagctgcaaatgcacatgagttcatatcatcattgaaggatgggtatgatactgat
tgtggagagcacggtatacaactctcaggaggacagaagcaaagaattgcaattgcaagg
gcaataatcaggaatccggcaatactactgcttgatgaagcaacaagcgcgcttgatgca
cagtcagagcaagtggtgcaggaagctcttgatcgaataatgtcagggaggaccacaatc
atggtggcacatcgactaaacacaatcaagaatgtagactcaattgctttcctgggagag
ggtaaagtggtggagcgtggctcttacccacagctcatgaacaagaaaggggcattctac
aacctcgcaactcttcagaagtaa
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integrated database retrieval system
