KEGG   Panicum virgatum (switchgrass): 120707954
Entry
120707954         CDS       T07260                                 
Name
(RefSeq) polynucleotide 3'-phosphatase ZDP-like isoform X1
  KO
K08073  bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    120707954
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pvir01009]
    120707954
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120707954
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     120707954
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.32  polynucleotide 3'-phosphatase
     120707954
Protein phosphatases and associated proteins [BR:pvir01009]
 HAD phosphatases
  Other HAD phosphatases
   120707954
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     120707954
SSDB
Motif
Pfam: zf-PARP PNK3P REF
Other DBs
NCBI-GeneID: 120707954
NCBI-ProteinID: XP_039848947
LinkDB
Position
5K:47662337..47670561
AA seq 629 aa
MLVTPCSFLSIARNTARLRFLLAASAARAARLAMSTAPQAAAAAVSVEYAKSGRSTCKGC
SGAIASGALRLGASTPDPRGFDATKWYHVACFPSDASHPLGPVESINGFDSIKEADREEL
HELVKNRERDQTAEPSPKKAKTQMPSPSEGVSDKASVSVEYAKSGRSTCKGCSKNIAKGA
LRLGASFHDPRGFENTKWYHVACFPTASYPVFPVENLKGFDSIEDHDREKLQELVENHKS
IGDSNEVTEKNPEELKNRDNKVDKTVNPLDEPSPKKVKTHMSSSMKAVSEKASVLVEYAK
SGRSTCKGCSENIAKGALRLGASAHDPRGYDSTKWYHVACFPTSSYPIFPVENLKGFDSV
KNNDREKLLELGENYKRDGNAADQSSEPSLKEEMVDSTRISKEGSENNLEEVKLSAGNNR
MRPVISFSVSDTNKDYKGATLPAHWKAFETVIFREQEDGLHASAKIAAFDFDGCLAKTSV
RIIGADKWSLQYKSIPKILQSLYNDGYKLVIFTNESNIDRWKNKRQEAVDSKVGRLDNFI
ECVKVPMQVFIACGLGQGKGTPDDPYRKPNPGMWWLMAQHFNSGIEIDMDKSFYVGDAAG
REKDHSDADIKFAEAIGLKFHVPEEYFGP
NT seq 1890 nt   +upstreamnt  +downstreamnt
atgctcgtcaccccctgctccttcctatccatcgcgcggaacaccgcccgcctccgcttt
ctcctcgccgcttccgctgctcgcgccgcccgcctcgccatgtcgaccgcgccgcaggcg
gcggcggcggctgtctccgtcgagtacgccaagtcgggccgctccacctgcaaggggtgc
agcggggccatcgcctccggggcgctccgcctcggcgcctccacgcccgacccccgcggc
ttcgacgccaccaagtggtaccacgtcgcctgcttcccctccgacgcgtcccacccgctc
ggccccgtcgagagcatcaatgggttcgactccattaaggaagccgatcgagaggaattg
catgagctagtgaagaatcgcgagagggaccagactgcagaaccaagtccaaagaaagca
aagactcagatgccgtccccttcagagggggtgtcagataaggcaagtgtctctgttgag
tatgcgaagtctggccgctctacatgtaaaggctgcagtaagaatattgccaaaggcgcc
ctccgccttggtgcctcttttcatgatccccgcggctttgaaaataccaagtggtaccat
gttgcatgcttccctacagcatcataccctgtatttcctgtggagaatctgaaggggttt
gattcaattgaggatcatgatcgtgagaaactgcaggagttagtggagaatcacaagagc
ataggggactctaatgaagttactgaaaagaatccagaagaattaaagaatcgtgataat
aaggtagacaagacagtcaatccattggatgagcctagtccaaagaaagtaaagactcac
atgtcttcatccatgaaggcggtgtctgaaaaggcaagtgtcttggttgagtacgcaaag
tctggtcgctccacctgcaagggatgcagtgagaatattgccaaaggcgccctccgcctc
ggtgcttctgctcatgatccgcgcggttatgacagcaccaaatggtaccatgttgcatgc
ttccctacctcatcatacccaatatttcctgtggagaatcttaaggggtttgattctgtc
aagaataatgaccgtgagaagttgctggagttgggtgagaattacaagagagatggcaat
gcagctgatcagtcgagtgagccaagcctgaaggaagaaatggttgacagcacgaggatc
tctaaagaaggttctgaaaataatctggaagaagtaaagttgtctgcagggaacaataga
atgcgcccagtgatatccttttcagtttctgataccaataaagattacaagggtgctaca
cttcccgctcattggaaggcttttgagacagttatcttccgtgaacaggaagatggcctt
catgcttcagctaagattgctgcatttgactttgatgggtgccttgccaaaacttctgtg
aggatcattggtgcagacaagtggtctttacagtataaatcaattccaaaaatattgcaa
agtctgtacaatgatggttacaaactggtcatattcaccaatgagtcgaacattgatcgc
tggaagaataagcggcaggaagctgttgactccaaagttggacgactcgataactttatt
gagtgtgttaaagtccctatgcaggttttcattgcttgtggtttagggcaaggaaaaggt
actccagatgatccataccgcaaaccaaatcctggaatgtggtggttgatggctcagcat
ttcaattccggaattgaaatcgacatggacaaatctttttatgttggtgatgctgccggg
agagaaaaagatcatagcgatgctgatataaaatttgctgaggccatcggtttgaagttt
cacgttcctgaggaatacttcggtccctag

DBGET integrated database retrieval system