Panicum virgatum (switchgrass): 120708045
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Entry
120708045 CDS
T07260
Name
(RefSeq) heat stress transcription factor A-4b-like
KO
K09419
heat shock transcription factor, other eukaryote
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120708045
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Heat shock factors
120708045
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSF_DNA-bind
APG6_N
CC_Bre1
ADIP
PI3K_P85_iSH2
CLEC16A_C
Shugoshin_N
Motif
Other DBs
NCBI-GeneID:
120708045
NCBI-ProteinID:
XP_039849070
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All DBs
Position
5K:48456371..48458950
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AA seq
448 aa
AA seq
DB search
MEAGGGGASSLPPFLSKTYEMVDDPATDAVVGWTPPGTSFVVANQAEFCRDLLPKYFKHN
NFSSFVRQLNTYGFRKIDPEQWEFANEDFIRGQRHRLKNIHRRKPIFSHSSHNQSSAPLA
DHERREYEKEIEKLKCENANLSSELEKNAEKKLDMERRMQELESKLIFLEDRQKNLIAYV
RDIVRAPGFRSSFVQQPDHHGKKRRLLIPVSVHQDANTEGNQIVHGGLTNPPVCRESFDK
MESSLNSLENFFREASEAFDISYDDGVPGPSSAVVITEVHSSGESDPVVPSPPSRMHTSS
AGAGDSLSRMYTSSAGAGDSLSSHDVTESTSCAESPPLPQMQSCTDSRAKVSEIDVNLEP
AITETGPSRDQPAEDHPSLAPANDGFWEQFLTEQPGSNAHQEVQSERRDGDSKDYQTRTG
DQENLWWGKKNVEQMTEKLGHLTSAEKT
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgggcggcgggggcgcgtcctcgctgccgccgttcctgagcaagacgtacgag
atggtggacgacccggccacggacgccgtggtggggtggacgccgccggggaccagcttc
gtcgtcgccaaccaggccgagttctgcagggatctgctccccaagtacttcaagcacaac
aacttctccagcttcgtgcggcagctcaacacctacggcttcagaaaaattgatcctgag
caatgggagtttgcaaatgaggatttcattaggggacaacggcaccgactgaaaaatata
cataggcgcaaacccatattcagtcactcatcacacaatcagtcttctgcaccgctggca
gatcatgaaaggcgggaatatgaaaaggaaatcgagaagctgaagtgtgagaatgcaaat
ctttcctcagagcttgaaaagaatgcggaaaagaaacttgatatggagagacgaatgcag
gagctggagagtaagttgatatttttggaggatcggcaaaagaatctgatagcttatgtc
agagatattgtacgggcaccaggatttcgctctagctttgtgcagcaacctgatcatcat
ggaaagaaaaggagactactaatacctgtttctgtccaccaagatgcaaatactgagggg
aatcagattgtgcatgggggcttaacgaacccaccagtttgcagagaatcatttgacaaa
atggagtcttccttgaactcattggagaatttctttcgagaagcaagtgaagcatttgat
atttcatatgatgatggtgtcccgggaccttcatctgccgttgttatcacagaggtccat
tcatctggagaaagtgatcctgttgtaccatcgcctccgtcaaggatgcatacctcttca
gctggtgcaggagattcactctcaaggatgtatacctcttcagctggtgcaggagattcg
ctctcttctcatgacgtaacagagtcaactagctgcgcagaaagtcctcccctccctcaa
atgcagtcctgtacagattcacgagctaaggtgtctgagattgatgttaatctggagcct
gctattacagaaactggtccgtcaagagatcaacctgccgaggaccatccaagtttagca
cctgcaaacgacggcttttgggagcaatttcttactgagcagcctggttccaatgcgcat
caggaggtccaatcagaaaggcgagatggagacagtaaagactatcagacaagaacagga
gaccaggaaaacttatggtggggaaagaagaatgtggaacagatgacagaaaagctgggg
catctcacctcagcagagaaaacctaa
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