Panicum virgatum (switchgrass): 120708124
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Entry
120708124 CDS
T07260
Name
(RefSeq) LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC9-like
KO
K09338
homeobox-leucine zipper protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120708124
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
120708124
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
CEP89
Myo5a
Motif
Other DBs
NCBI-GeneID:
120708124
NCBI-ProteinID:
XP_039849172
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All DBs
Position
5K:complement(49246801..49251781)
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AA seq
739 aa
AA seq
DB search
MGSSSRPPPRTQDFFPAPALSLSLAGGFGRNEPAASGGEEVDAGDEGGGGIRLRPGEAAE
ISSENTAAGSQQSGGEEAAGHGDGGDNKRRKSYHRHTAEQIKAMEAVFKESPHPDEKQRQ
QLSQELGLSARQVKFWFQNRRTQIKATQERHENALLKSELEKLQGENRAMRELAKKSPRC
PGCGAAAAASTEEQQLRLENAMLKAEVERLRGTLGTPAADELAVAAPASPSPPRPRRRAR
LAPSGSAAGGGGLSGHDRTRILELTAMCSAGEPLWVRSLETGRDVLNYDEYARRFQRGGD
DPAGGGEQRAGWSVEASRETGVVFLDTTQLVNAFMDANQWMELFPTMISKAATLAVIRAG
QNDDKDGVVQLMFAEVQTLTPLVPTRELSFLRHCKKLTADKWAVVDVSVDNVEPDARTSS
TASKCLKKPSGCVIEEQTNGRCKVTWVEHATCRNAAVPSMCRPAAASGLTFGARRWVAAL
RLQCERMVFSVATNIPARDSAGVATLAGRRSVLKLAHRMASSLCRVIGGSRGLAWSGQAS
NSGGVRVTSRRNAGDDPGEPCGLVACAVLSAWLPVNPAALLDFLRDASRRHEWDVMLPPG
RPVRSRVSVAKGKDRGNCVTAYAPGEQDGEWILQDSSTGPCESTVAYAPVDAAALRAVID
GHDSSGVAVLPCGFAVMPDGLECRPAVITSCRKEEEENRAAACGALVTVAFQALASMSPA
NDGALPQDAAEQWRSQPKK
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggatccagcagccgaccaccaccgcgcacccaggacttcttcccggctccggcgctc
tccctctcgcttgcgggtgggtttggccggaatgagccggcggcgtctggtggggaggaa
gtggatgctggcgatgagggcggcggcgggatcagactgagaccaggcgaggcggcggag
atcagcagcgagaacacggcggcgggaagccagcagtccggcggggaggaagcagcgggg
catggagacgggggcgacaacaagaggaggaagagctaccacaggcacaccgccgagcag
atcaaggccatggaagcggtattcaaagagtccccgcatccagacgagaagcagcggcag
cagctgagccaggagctcggcctctccgcacgccaagtcaagttctggttccagaaccgg
cgaactcagatcaaggcaacccaggagcggcacgagaacgcgctgctcaagtccgagctg
gagaagctccagggggagaaccgcgccatgcgggagctcgccaagaaatcgccacgctgt
ccgggctgcggcgccgccgccgccgcgagcacggaagagcagcagctccggctggagaac
gccatgctcaaagccgaggtggagaggctgcgcgggaccctgggaacccctgccgccgac
gagctcgccgtcgccgccccggcctcgccgtcgccgccccggcctcgccgtcgcgctcgg
ctcgcgccatccggatcggctgcgggcggcggcggcctttcgggacacgacagaacgagg
atcctggagctgacggcgatgtgctccgccggggagccgctctgggtgcgcagcctcgag
accggccgcgacgtcctcaactacgacgagtacgcgcggcggttccagcgcggcggcgat
gatcccgctggcggcggagagcagcgggccgggtggtcggttgaggcgtcgagggagacc
ggggttgttttcctcgacacgacgcagctcgtgaatgctttcatggatgcgaaccaatgg
atggagctatttcctaccatgatctcgaaggccgcgacgctggctgtgatccgtgccggc
cagaatgatgacaaagacggtgtcgtgcaactgatgttcgcagaggtccagacgctgaca
ccattggtaccgacgagggagttgagcttccttcgccactgcaagaagcttaccgccgac
aaatgggccgtcgtcgatgtctccgtcgacaacgttgagccggatgcacggacgtcgtcg
acggcttccaagtgcttgaagaagccctcagggtgcgtcattgaagagcagaccaacggc
cgctgcaaggtgacctgggtggagcacgccacatgccgcaacgccgcggtcccgtcgatg
tgccggccggcggccgcgagcggcctgacgttcggcgccaggcgctgggtggcggcgctc
aggctccagtgcgagcggatggtcttctcggtggcgaccaacattccggcaagggactca
gccggtgtcgccacactggcgggcaggcggagcgtcctgaagctcgcgcaccggatggca
tcgagcctgtgccgcgtcatcggcggatcgcggggcctggcgtggagcgggcaggcgtcg
aacagcggcggcgtccgcgtgacgtcccggaggaacgccggcgacgaccctggcgagccg
tgcgggctggtcgcctgcgccgtgctgtcggcgtggctgccagtgaacccggcggctctc
ctcgacttcctcagggacgcgtcgcggcggcacgagtgggacgtgatgctgccgcccggg
cggcccgtccggagccgcgtcagcgtggccaaggggaaggaccgcggcaactgcgtcacg
gcatacgccccgggagagcaggacggcgagtggatcctccaggacagcagcaccggcccc
tgcgagtcgaccgtggcgtacgcgccggtcgacgccgcggccctgcgggcggtgatcgac
gggcacgactcgagcggcgtggccgtcctgccgtgcggcttcgcggtgatgccggacggg
ctggagtgcaggcccgcggtgatcacgtcgtgccggaaggaggaggaggagaacagggcg
gcggcgtgcggagcgctggtcaccgtggcgttccaggcgctggccagcatgtcgccggcg
aacgacggcgcgctcccgcaggacgccgcggagcagtggcgaagccagcccaaaaaatga
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