Panicum virgatum (switchgrass): 120708174
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Entry
120708174 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120708174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120708174
03012 Translation factors [BR:
pvir03012
]
120708174
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120708174
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120708174
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120708174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
Ank_5
Ank_2
nSTAND3
ATPase
AAA_19
AAA_22
AAA_23
Ank
AAA_7
Rad17
NPHP3_N
PhoH
AAA_16
Motif
Other DBs
NCBI-GeneID:
120708174
NCBI-ProteinID:
XP_039849233
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All DBs
Position
5K:49766033..49775803
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AA seq
1263 aa
AA seq
DB search
MGHLSGLSVRPNSLRPPLAASTRSRFSLGAPQKRSLNGATAAGEQHRRSSQTARAAPKET
AQPQRQPRGDDGDQRMVRKGRKGKGASAASAMNEATLVRVTKALDDFRASDAEVYTFEPD
ISKEERAGIHEMCRKMGMKSKSSGVGTRRRLSVYKSKRNQGPDMEEGPSHLGFSEESRHV
LQDLFTHYPPDDADLNGDASQNSSDKAANIKWKTDSAFCRPAMSKHDITKKVEMFSTKIN
GSPQLRKIMEDRSKLPISSFKDFITSTLDNHQVVLISGETGCGKTTQVPQYILDHMWGKG
ESCKIICTQPRRISAISVAERISAERGEAVGDTVGYKIRLESKGGKNSSVMFCTNGVLLR
VLIGRGTNTSKTRNPKKSLDDAILGISHIIVDEIHERDRFSDFMLTILRDLLPVYPHLRL
VLMSATIDAVRFSQYFNGCSVIQVPGFTYPVKTYYLEDVLSILQSEGDNHLSTTTSDKKQ
SSILTEDFKSSMDDSINLALVNEEFDPLLELISAEQNPEIYNYQHSETGVTPLMVFAAKG
QLGDVCMLLSFGVDCSAQDRDGKSALDWAQQEKQQEVYEVIIKHMECSSAKSTEDNELLN
KYMATINPEHIDTLLIERLLGKICVDSNEGAILVFLPGWEDINQTREKLRASPFFRDSSR
CLVLSLHSMIPSSEQKKVFKHPPAGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYD
PYNNVSTLHASWVSKANARQREGRAGRCQAGICYHLYSRFRAASLPNYQIPEIKRMPIEE
LCLQVKLLDSNCRIADFLKKTLDPPIPESVRNAITVLQDLGALTQDEQLTELGEKLGSLP
VHPSTTKMLLFAILMNCLDPALTLACAADYRDPFFLPMAPDERKSATAGKVELASLYGGF
SDQLAVVAAFDCWRRAKDRGQESQFCTKYFISSSIMQMLSNMRKQLQSELYQRGFVPADT
SACSLNSNDPGIMRAVLMAGAYPMVGRLLPPRRNAKKTVVETASGGKVRLHPHSCNFNLS
FDKSSGNPLLIYDEVTRGDGGMYIKKCSVVGSCPLLLLASEMVVAPPDDDSDEEEDSSED
EAGKSTLVQHRKEKIMSSPDNTVSVVVDRWLRFDASALDVAQIYCLRERLASSILFKVKH
PQDVLPPALGASMYAIACILSYDGLPDMCPSNDLLQNSVEARRFSLGKRGYIPPGGYLRS
FADRPHHAPYSQNSSNHSGGASAYTQPSRAPDGRFDQSQRSFRNSGPGSSKPRSFKRQRN
TAQ
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgggccacctgtctggcttgtcggtccgtccaaactctctgcgacccccgctcgccgcc
tcgactcgctctaggttttccctcggcgcaccgcagaagcgcagcctcaacggagcgacc
gccgccggggagcaacaccgccgctccagccaaaccgcgcgcgccgcaccgaaggaaacc
gcccagccacagcgccagcctcgcggcgacgacggggaccaaaggatggtgcggaagggg
cggaaggggaagggcgcgtctgccgcgtccgcgatgaacgaggcgacgctggtgcgcgtc
accaaggcgctggatgacttccgcgcctccgacgccgaggtgtacacatttgaacctgat
atatccaaagaagagcgagcaggaatccatgagatgtgtagaaaaatgggcatgaaatcc
aaaagttctggggttgggacacggcgacgcctctctgtttataaaagtaaacggaaccag
gggcctgatatggaagaaggcccttcccaccttgggttttctgaagagtcaagacatgtt
ttgcaggatttatttactcattatcctcccgatgatgctgatttaaatggagatgccagc
cagaattctagtgataaggccgcaaacatcaaatggaaaacagatagtgccttttgcagg
ccagcaatgagcaaacacgatataacaaagaaagttgagatgttttccactaaaataaat
ggatccccacagttgaggaagatcatggaagacagatcaaagcttcctatttcatccttt
aaggattttatcacttcaactttggataatcaccaggtggttcttatttctggagaaaca
ggctgcggtaaaaccacccaggttccgcaatacatcttggatcatatgtggggcaaaggt
gaatcttgtaagatcatatgcactcaaccacgtcggatatcagctatttcagttgctgag
cgaatctctgctgaaagaggagaggctgttggtgatacagttggatataagatacgtctg
gaatcaaaaggagggaagaattcatcagtcatgttctgcacaaatggtgttcttttgaga
gtactgataggaagaggaactaatacctcaaaaacacgaaatccaaagaagtcactggat
gatgcaattttgggaatatcacacatcattgtggatgaaatccacgaaagggataggttt
tctgatttcatgctgactattctaagagatttgttgccggtgtatcctcatcttcgtttg
gtgctaatgagtgcaacaattgatgctgtgaggttttctcaatacttcaacggatgctca
gtcattcaagtccctgggtttacctatcctgtcaaaacttactatttggaggatgtgctt
tctattctgcaatccgagggtgataatcatcttagtactacaaccagtgataaaaaacag
agtagtattttaactgaagattttaaaagctcaatggatgattcaattaacctagctttg
gtcaatgaagaatttgatcctctccttgagcttatttctgcagagcagaacccggaaatc
tacaactatcagcattcggagactggtgtaacacctttaatggtttttgctgcaaagggt
cagctaggggatgtctgtatgcttttatcttttggtgttgattgttcagcacaggatcgt
gatggaaaatctgcattagattgggcacagcaagaaaaacaacaagaggtttatgaagta
atcattaaacatatggagtgtagttcagcaaaatcaactgaagataatgagctgcttaat
aagtacatggccactattaacccggagcacattgatactttgctaatagaacggttgctt
ggaaaaatttgtgtggattccaatgaaggagctatcttggtatttcttcctgggtgggaa
gatatcaaccaaacacgggaaaagttacgtgcttcaccattctttcgggattcatcaaga
tgtcttgtgctgtcacttcattcaatgatcccgtcttcagagcagaaaaaggttttcaaa
catccacctgcaggagttcgtaaaattattctctcaaccaatattgcagagactgctgtg
acaattgatgatgttgtgtttgtcatagatagtgggagaatgaaagagaaaagctatgat
ccatacaataatgtgtccacacttcatgcttcctgggtttcaaaagctaatgcaagacaa
cgtgaagggcgtgctggtcgttgtcaggcaggaatttgctatcatctttactcaaggttt
agagcagcatcattgccaaactaccaaattcctgaaataaaaagaatgccgatcgaagaa
ctttgtttgcaggtcaaattgcttgattcaaactgccgaatagcagattttctgaagaaa
acattggaccctccaattccagaaagtgtaaggaatgccattactgtgcttcaggatctt
ggtgctttgacacaagacgaacaactaacagagttaggtgaaaaactgggttctcttccg
gtccatccatccacaaccaagatgctcctgtttgctatattaatgaactgcctggatcca
gcattgacattggcatgtgcagcggattatagagatccattcttccttccaatggctcca
gatgagaggaaaagcgcaactgcagggaaagttgagcttgcttcattgtatggtgggttc
agtgaccagcttgctgttgtggcagcattcgactgctggaggcgtgccaaagatagaggc
caagaatctcaattttgtacgaagtactttatctcttcgagcatcatgcagatgctatca
aacatgaggaaacagcttcagagtgaactgtatcaaagagggtttgttcctgcagatacg
tctgcctgcagcttaaactcaaatgatccaggtatcatgcgtgctgttcttatggctgga
gcttacccaatggtagggagattgctacctcctcgcagaaatgctaaaaagacagttgtg
gaaacagcaagtggtggcaaagttcgtcttcatccacattcgtgcaattttaacctatca
tttgataaatcttctgggaacccactactgatatatgatgaggtcactcgaggtgatggt
ggaatgtatataaaaaaatgttcagttgttgggtcatgtccattgcttctgctcgcttca
gaaatggttgttgctccacctgatgatgatagtgatgaagaggaagattccagcgaggat
gaagctgggaaaagcactttggtacagcacagaaaagaaaagatcatgtcttctcctgat
aacactgtttcagttgttgttgatcgttggcttcgatttgatgcttcggctctggatgtt
gctcaaatttactgcttaagagaacgtctagcatcttctattcttttcaaagtgaaacat
cctcaagacgttctcccaccagcccttggagcatcgatgtatgccatcgcatgcatcctc
tcatacgatggcctgcctgatatgtgtccatccaatgatcttttacagaattcagtggaa
gctagaagattctccctggggaaaagaggctatattccaccaggtggttacctcaggtcc
ttcgccgataggccgcatcatgcaccttattctcaaaactcgtccaaccattcaggaggt
gcttcagcgtatactcagccatcccgggctcccgatggcaggtttgatcaatcccagcgt
tctttccgcaattctggacctggaagttcaaagccacggtctttcaagaggcagcgcaac
acagcacagtaa
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