Panicum virgatum (switchgrass): 120708181
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Entry
120708181 CDS
T07260
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120708181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120708181
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120708181
mRNA degradation factors
5'-3' decay
Decapping complex
120708181
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
120708181
NCBI-ProteinID:
XP_039849243
LinkDB
All DBs
Position
5K:49818084..49824366
Genome browser
AA seq
808 aa
AA seq
DB search
MLGVEPDGGGGGAPSSAAENFDAGQYAFFGKEPLEGFELGGLENAGGDGNGGGFGGPEEG
LYRLSSVGEEVDDLSNLSDIDDLASTFAKLNRTISGTRNPGVIGDRRSISRGSSLTVDWA
EDADYSNWVDQDVFENEEFQESKRWWSSNSSVQQGDSNSRPLSRTSSYPQQPLQHRSSEP
IVLPKTTSFTSFPPPVGGGSRSPYPAQGLTRHGSIPSIGAGLQMGSPSMSLSASPYHMVG
PSHGLPYTGGMPYGALNLPVNNPMQSDWPNQANPFPGEHLNLLPNLLHKQLSLPNSPMSS
LLFSQHQQRLAQVQSSHQNYLNIPPHLLYPHHSAEVIGRFDSVGSSHSSRDKRSRSGRGK
HNIRFSQPPSDTGSQNGDSGGIKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQAC
MAKRGATSKQKNNFSPASMKDLPSKSRSSSDQHTYLQVDALGRVSFSSIRRPRSLLEVDH
PSSVDGSHDQKSTMRPLEKEPMLAARVTVEDAICLLLEVDDIDRLLQSSQSQDNSFQLKR
RRQVLLEGLAASLQLVDPLGPSKSSHSSGSALKDDVVFLRIVSLPKGRKFLARYLRLLVP
GSELTRIVCMAIFRHLRFLFGGLPSDSSAAETTIALAKAVSSCVHHMELGALSACLAAVV
CSSEQPPLRPLGSSAGDGASLIIKSVLDRATELLTDHHAAASYTVPNRTLWQASFDAFFG
LLTKYCVSKFESIQQMFVLQAPTPVIGPEACKATSKEMPVELLRASLPHTNEQQRQRLLD
FAQRSMPVTGFNPPGTRGGHITSESVPG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcgtcgagcccgacggcggcggcggcggcgcgccctcctccgctgcagagaat
tttgacgccgggcagtacgctttcttcgggaaggagccactggaagggttcgagctcggc
ggcttggagaacgccggcggcgatggcaatggcggtggattcggtgggccagaagagggg
ctgtatcgtctctcctctgttggagaagaggtggacgatctcagtaacttgtccgacatt
gatgatcttgcaagcacctttgctaagttgaaccgaaccatcagtggaacccggaatcct
ggtgtcatcggggacaggcgatccatttcaagagggagttctttaactgttgattgggct
gaggatgcagattattcaaactgggtagatcaggatgtatttgaaaatgaggaattccag
gaaagtaaaagatggtggtcatcgaattcttcagttcagcaaggggactccaactccagg
ccactaagccgaacatcttcctatcctcagcagccactgcagcaccggtcaagtgaacct
atcgttctcccgaaaaccacatcatttacctcctttccaccaccagttggtggtggcagt
agatcaccctaccctgctcaaggccttacacgtcatgggagtattccatcaattggtgct
gggctccaaatgggttcgccaagcatgtcactttctgcttctccatatcatatggttgga
ccatctcatgggctaccatacacaggaggcatgccttatggagctcttaacctgcctgta
aacaatccaatgcaaagtgattggccaaaccaagctaaccctttccccggggagcatctt
aatctactgcccaacttattacataaacaattatcgcttcctaatagcccaatgtcatcg
ctcctattttctcagcatcagcagagattggcacaggtccaatcatcccatcagaattac
ctcaatataccgccacacctgttatacccccaccactctgcagaggtaataggcaggttt
gattctgttggcagttctcattcatcaagagacaagagatcaaggtcaggaaggggaaaa
cataatattcgcttctctcaaccaccatctgatactggtagccagaatggtgatagtgga
ggtataaagtttagatccaagtacatgtcatctgaagagatcgaatcaattctgagaatg
cagcattctgcaagtcacagcagtgatccttatgttgttgattactaccatcaagcttgt
atggctaaaaggggtgccacttctaagcaaaagaataacttctccccagcatcaatgaaa
gacttaccatccaagtctcgatccagcagtgatcagcacacatatcttcaggttgatgct
cttggaagagtgtctttctcttccatacgtaggcctcggtctcttcttgaagttgaccac
ccttcatccgttgatggctctcatgatcagaagtccactatgaggcccctggagaaagaa
ccaatgctggcagcaagagtgactgtggaagatgccatttgccttcttcttgaggtggat
gacattgaccggctgttgcagtctagccagtcacaggacaacagtttccaactgaagcga
agacggcaagtcctccttgaaggtctagctgcatcacttcagcttgttgaccctctcgga
cccagcaaatctagtcattcatctgggtcagccctgaaggatgatgttgtttttcttcgt
attgtttctctgcccaaaggacgtaagtttttagcacgttaccttcggcttcttgtccct
ggcagcgagctgacccggatagtatgcatggctatttttcgccatctgaggttcttgttt
gggggtttgccatcagactctagtgcagcagaaactacaattgctctcgcaaaggctgtt
tcgtcttgtgtgcatcacatggaacttggtgctcttagtgcgtgccttgctgctgttgtc
tgctcatcagaacagccacctctccgccctcttggtagctctgctggtgacggggcttct
ctaattattaaatcagttctggatcgagcaactgagttgctgactgatcatcatgctgca
gccagctacactgtgccgaaccgaactctctggcaggcatcatttgatgctttctttggg
ctactaacaaaatactgtgttagtaagttcgaaagtattcagcagatgtttgtcttgcag
gcacctaccccagtaattggacctgaggcttgcaaagctactagtaaggagatgcctgtt
gagctacttcgtgcaagccttcctcatacaaatgagcagcaacgccagaggcttcttgat
tttgctcaaagatccatgccggtaacaggtttcaatcccccgggtactagaggtggacac
atcacttcagaatctgttcctggttga
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