KEGG   Panicum virgatum (switchgrass): 120708234
Entry
120708234         CDS       T07260                                 
Name
(RefSeq) WD repeat-containing protein 13-like
  KO
K24739  WD repeat-containing protein 13
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:pvir04990]
    120708234
Domain-containing proteins not elsewhere classified [BR:pvir04990]
 Other domain-containing proteins
  WD40 repeat (WDR) domain-containing proteins
   120708234
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_RIG_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_ACSF4 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_HPS5 Beta-prop_WDR75_1st NBCH_WD40 WD40_Gbeta Beta-prop_SCAP WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_VPS8 Beta-prop_TEP1_C Beta-prop_DCAF12 WD40_like Beta-prop_RIG_1st KNTC1_N Beta-prop_WDR41 Beta-prop_Nup120_160 Beta-prop_SPT8 PQQ_2 DUF1582 CPSF_A
Other DBs
NCBI-GeneID: 120708234
NCBI-ProteinID: XP_039849306
LinkDB
Position
5K:complement(50427594..50431639)
AA seq 472 aa
MAAPADSASPECPAAPSMPTDPDFLSCVLQPPAPSSSRPDADYAALRRLLLRRKPPSALQ
HRMDWRCNGKGYVAYRNFLLRRIDGGSAHSTPSNSGRWAASPGPALSEADSWSSLRDLRT
NNSGLSRTLSISSKQSDTERHVRFAEPAYSFVGMHCIFDSCKTSVTILKFGRASSDLLAY
GAADGNLTVCQVSEPPSVLQKLIGHSKNITDFDFSSNNQYIASCSLDKTVRVWEISKGTC
IRVVYGVSSQLCICFHPVNNNLLLVGNANKEINAINFSTGRVISKLNFDDAVTALDIDHT
GQLIFAGDAQGYIYTVSVNSHTGSLSRTHKNKSSKSKSPITTIQYRTFSLVARCPVLLSC
AQDGNLSFFSITTDAKGYLTLISSLKLASRLQTIRASFCPLLSLEKGEFIVTGSEDANVY
FYDLARPKNSCVNKLQGHGSPVIGVAWNHGENLLASSDSDGTVIVWKRAKTN
NT seq 1419 nt   +upstreamnt  +downstreamnt
atggccgcccccgccgactccgcctccccggagtgccccgccgccccctccatgcccacg
gacccggacttcctcagctgcgtcctccagcccccggccccttcctcctcccgccccgac
gccgactacgccgccctccgccgtctgctcctccgccgcaagccgccctccgccctccag
caccgcatggactggcgctgcaacggcaagggctacgtcgcctaccgcaacttcctcctc
cggcgcatcgacggcggtagcgcccacagtacgcccagcaacagtggaaggtgggctgcc
tctcctggccctgcactttccgaggcagacagctggagttctctccgggacttgagaact
aataacagtggtttaagccgcactctaagtatcagttcaaagcagagtgatactgagcgc
catgtcagattcgctgagcctgcatactcgtttgttggaatgcattgcatttttgacagc
tgcaaaacctcagttacaatattgaaatttggccgcgcaagttctgatctgcttgcgtat
ggtgcggcagatggcaacctaactgtttgccaggtttctgagccaccatctgttcttcaa
aaattgataggtcactctaaaaatatcacagattttgatttttcatctaataaccagtac
attgcttcatgctccctggataaaactgtgcgagtatgggaaatctctaaaggcacttgc
attagggttgtatatggagtttcttcccagctatgcatctgctttcatcctgtgaacaac
aacttgcttttagtcggcaatgcaaacaaggaaatcaatgcaataaattttagcactggg
agagtaatcagcaaacttaactttgatgatgcggttacagctttggatattgatcacact
gggcagcttattttcgctggtgatgcacagggttacatatatactgttagtgtgaattca
catacagggtcactatctagaactcataagaacaagagcagtaagagcaaatctcctatt
acaacaatccagtatcgcaccttttctctggtagcacgttgtccagtacttctttcttgt
gctcaagatggaaacctgtctttcttcagtatcacaacagatgctaaagggtacttgact
ctcatatcttctttaaaactggcctcacggttgcagactatccgtgcttccttctgtcca
cttctttcccttgagaaaggagagttcatagttactggcagcgaggatgcaaatgtttac
ttctatgatttggcacgcccaaagaactcgtgtgtgaataaactacagggacatggttct
ccagtaattggagttgcctggaaccatggggaaaatttgctggcctcatctgattcagat
ggtacagttattgtatggaagcgagcgaaaactaattag

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